# Generated by roxygen2: do not edit by hand

export(combineInTAD)
export(combineWithLoops)
export(filterGeneExpr)
export(findCorFromLoops)
export(findCorrelation)
export(geneCoords)
export(loadSigInTAD)
export(newSigInTAD)
export(plotCorAcrossRef)
export(plotCorrelation)
export(sigCoords)
export(signals)
exportClasses(InTADSig)
exportMethods(exprs)
exportMethods(geneCoords)
exportMethods(sigCoords)
exportMethods(signals)
import(GenomicRanges)
import(MultiAssayExperiment)
import(SummarizedExperiment)
import(ggplot2)
import(ggpubr)
import(graphics)
import(mclust)
import(methods)
import(qvalue)
importFrom(Biobase,exprs)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,getListElement)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(rtracklayer,import.gff)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,na.omit)
importFrom(stats,qnorm)
importFrom(utils,read.delim)
importMethodsFrom(GenomicRanges,intersect)
