# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Jun  3 18:50:30 2021
# ------------------------------------------------

package:
  name: bioconductor-intad
  version: 1.12.0
source:
  md5: 553387b73a7b4172bdf4f761d6794433
  url:
    - https://bioarchive.galaxyproject.org/InTAD_1.12.0.tar.gz
    - https://bioconductor.org/packages/3.13/bioc/src/contrib/InTAD_1.12.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-intad/bioconductor-intad_1.12.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hdfd78af_0
requirements:
  host:
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    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
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    - r-mclust 5.4.7 r41h52d45c5_0
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    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
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    - xz 5.2.5 h516909a_1
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    - zstd 1.5.0 ha95c52a_0
  run:
    - bioconductor-biobase >=2.52.0,<2.53.0
    - bioconductor-biocgenerics >=0.38.0,<0.39.0
    - bioconductor-genomicranges >=1.44.0,<1.45.0
    - bioconductor-iranges >=2.26.0,<2.27.0
    - bioconductor-multiassayexperiment >=1.18.0,<1.19.0
    - bioconductor-qvalue >=2.24.0,<2.25.0
    - bioconductor-rtracklayer >=1.52.0,<1.53.0
    - bioconductor-s4vectors >=0.30.0,<0.31.0
    - bioconductor-summarizedexperiment >=1.22.0,<1.23.0
    - r-base >=4.1,<4.2.0a0
    - r-ggplot2
    - r-ggpubr
    - r-mclust
test:
  commands:
    - $R -e "library('InTAD')"
about:
  description: The package is focused on the detection of correlation between expressed
    genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data)
    either within topologically associated domains (TADs) or between chromatin contact
    loop anchors. Various parameters can be controlled to investigate the influence
    of external factors and visualization plots are available for each analysis step.
  home: https://bioconductor.org/packages/3.13/bioc/html/InTAD.html
  license: GPL (>=2)
  license_file: /opt/conda/conda-bld/bioconductor-intad_1622762131322/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/R/share/licenses/GPL-3
  summary: Search for correlation between epigenetic signals and gene expression in
    TADs
extra:
  copy_test_source_files: true
  final: true
