{% set version = "1.12.0" %}
{% set name = "InTAD" %}
{% set bioc = "3.13" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 553387b73a7b4172bdf4f761d6794433
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: testthat, BiocStyle, knitr, rmarkdown
requirements:
  host:
    - 'bioconductor-biobase >=2.52.0,<2.53.0'
    - 'bioconductor-biocgenerics >=0.38.0,<0.39.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-multiassayexperiment >=1.18.0,<1.19.0'
    - 'bioconductor-qvalue >=2.24.0,<2.25.0'
    - 'bioconductor-rtracklayer >=1.52.0,<1.53.0'
    - 'bioconductor-s4vectors >=0.30.0,<0.31.0'
    - 'bioconductor-summarizedexperiment >=1.22.0,<1.23.0'
    - r-base
    - r-ggplot2
    - r-ggpubr
    - r-mclust
  run:
    - 'bioconductor-biobase >=2.52.0,<2.53.0'
    - 'bioconductor-biocgenerics >=0.38.0,<0.39.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-multiassayexperiment >=1.18.0,<1.19.0'
    - 'bioconductor-qvalue >=2.24.0,<2.25.0'
    - 'bioconductor-rtracklayer >=1.52.0,<1.53.0'
    - 'bioconductor-s4vectors >=0.30.0,<0.31.0'
    - 'bioconductor-summarizedexperiment >=1.22.0,<1.23.0'
    - r-base
    - r-ggplot2
    - r-ggpubr
    - r-mclust
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>=2)'
  summary: 'Search for correlation between epigenetic signals and gene expression in TADs'
  description: 'The package is focused on the detection of correlation between expressed genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data) either within topologically associated domains (TADs) or between chromatin contact loop anchors. Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

