# Generated by roxygen2: do not edit by hand

export(AnnotationScatterPlot)
export(CalcSilhInfo)
export(ClusteringScatterPlot)
export(FindAllGeneMarkers)
export(FindGeneMarkers)
export(GeneHeatmap)
export(GeneScatterPlot)
export(HierarchicalClustering)
export(MergeClusters)
export(PCAElbowPlot)
export(PrepareILoReg)
export(RenameAllClusters)
export(RenameCluster)
export(RunPCA)
export(RunParallelICP)
export(RunTSNE)
export(RunUMAP)
export(SelectKClusters)
export(SelectTopGenes)
export(SilhouetteCurve)
export(VlnPlot)
import(LiblineaR)
import(Matrix)
import(SparseM)
import(aricode)
import(ggplot2)
import(pheatmap)
importFrom(DescTools,AUC)
importFrom(LiblineaR,LiblineaR)
importFrom(Matrix,Matrix)
importFrom(Matrix,rowSums)
importFrom(RSpectra,eigs_sym)
importFrom(Rtsne,Rtsne)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"logcounts<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(aricode,clustComp)
importFrom(cluster,silhouette)
importFrom(cowplot,plot_grid)
importFrom(dendextend,cutree)
importFrom(doRNG,"%dorng%")
importFrom(doSNOW,registerDoSNOW)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,top_n)
importFrom(fastcluster,hclust.vector)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(methods,as)
importFrom(methods,is)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(parallelDist,parDist)
importFrom(plyr,mapvalues)
importFrom(reshape2,melt)
importFrom(scales,muted)
importFrom(stats,as.dendrogram)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(stats,wilcox.test)
importFrom(umap,umap)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
