calculate_midpoint_distance1d
                        Distance between Midpoints of two Peaks
calculate_midpoint_distance2d
                        Distance between Anchor Midpoints of two
                        Interactions
calculate_relative_overlap1d
                        Relative Anchor Overlap of two Peaks
calculate_relative_overlap2d
                        Relative Anchor Overlap of two Interactions
chiapet                 Example Genomic Interaction Data Set
chipseq                 Example Genomic Peak Data Set
determine_anchor_overlap
                        Identifies Overlapping Anchors
draw_idr_distribution_histogram
                        Create histogram of IDR values
draw_rank_idr_scatterplot
                        Create scatterplot of IDR values
draw_value_idr_scatterplot
                        Create scatterplot of IDR values
establish_bijection     Finds One-to-One Correspondence between Peaks
                        or interactions from Replicate 1 and 2
establish_bijection1d   Finds One-to-One Correspondence between Peaks
                        from Replicate 1 and 2
establish_bijection2d   Finds One-to-One Correspondence between
                        Interactions from Replicate 1 and 2
establish_overlap1d     Establish m:n Mapping Between Peaks from
                        Replicate 1 and 2
establish_overlap2d     Establish m:n mapping between interactions from
                        replicate 1 and 2
estimate_idr            Estimates IDR for Genomic Peaks or Genomic
                        Interactions
estimate_idr1d          Estimates IDR for Genomic Peak Data
estimate_idr2d          Estimates IDR for Genomic Interaction Data
estimate_idr2d_hic      Estimates IDR for Genomic Interactions measured
                        by HiC experiments
parse_hic_file          Obtain Read Counts per Block in HiC Contact
                        Matrices
preprocess              Prepares Data for IDR Analysis
remove_nonstandard_chromosomes1d
                        Removes Peaks on Non-standard Chromosomes
remove_nonstandard_chromosomes2d
                        Removes Interactions on Non-standard
                        Chromosomes
