# Generated by roxygen2: do not edit by hand

export(calculate_midpoint_distance1d)
export(calculate_midpoint_distance2d)
export(calculate_relative_overlap1d)
export(calculate_relative_overlap2d)
export(determine_anchor_overlap)
export(draw_idr_distribution_histogram)
export(draw_rank_idr_scatterplot)
export(draw_value_idr_scatterplot)
export(establish_bijection)
export(establish_bijection1d)
export(establish_bijection2d)
export(establish_overlap1d)
export(establish_overlap2d)
export(estimate_idr)
export(estimate_idr1d)
export(estimate_idr2d)
export(estimate_idr2d_hic)
export(parse_hic_file)
export(preprocess)
export(remove_nonstandard_chromosomes1d)
export(remove_nonstandard_chromosomes2d)
importFrom(GenomeInfoDb,keepStandardChromosomes)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,IRanges)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(futile.logger,flog.info)
importFrom(futile.logger,flog.warn)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(grDevices,rainbow)
importFrom(idr,est.IDR)
importFrom(magrittr,"%>%")
importFrom(reticulate,import)
importFrom(reticulate,use_condaenv)
importFrom(reticulate,use_python)
importFrom(reticulate,use_virtualenv)
importFrom(scales,log10_trans)
importFrom(scales,math_format)
importFrom(scales,trans_breaks)
importFrom(scales,trans_format)
importFrom(stats,complete.cases)
importFrom(stringr,str_sort)
importFrom(stringr,str_trim)
importFrom(utils,data)
