# Profiling and Analyzing Intrinsically Disordered Proteins in R

## Documentation for package ‘idpr’ version 1.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

chargeCalculationGlobal | Protein Charge Calculation, Globally
chargeCalculationLocal | Charge Calculation Along a Protein Sequence
chargeHydropathyPlot | Charge-Hydropathy Plot
Disorder40 | Disorder-based Substitution Matrices.
Disorder60 | Disorder-based Substitution Matrices.
Disorder85 | Disorder-based Substitution Matrices.
DisorderMat | Disorder-based Substitution Matrices.
DUNMat | A Substitution Matrix for Aligning Intrinsically Disordered Proteins
EDSSMat | EDSSMat Disorder-based Substitution Matrices.
EDSSMat50 | EDSSMat Disorder-based Substitution Matrices.
EDSSMat60 | EDSSMat Disorder-based Substitution Matrices.
EDSSMat62 | EDSSMat Disorder-based Substitution Matrices.
EDSSMat70 | EDSSMat Disorder-based Substitution Matrices.
EDSSMat75 | EDSSMat Disorder-based Substitution Matrices.
EDSSMat80 | EDSSMat Disorder-based Substitution Matrices.
EDSSMat90 | EDSSMat Disorder-based Substitution Matrices.
foldIndexR | Prediction of Intrinsic Disorder with FoldIndex method in R
GorillaTP53 | Human Cellular tumor antigen p53 and homologs
hendersonHasselbalch | Henderson-Hasselbalch Equation
idpr | idpr: profiling and analyzing Intrinsically Disordered Proteins in R
idprofile | IDp PRofile From idpr Package
iupred | Prediction of Intrinsic Disorder with IUPred2A
iupredAnchor | Prediction of Intrinsic Disorder with IUPred2A
iupredRedox | Prediction of Intrinsic Disorder with IUPred2A
KDNorm | Kyte and Doolittle Scaled Hydropathy Index
meanScaledHydropathy | Calculate the Mean Scaled Hydropathy
netCharge | Protein Charge Calculation, Net Charge
pKaData | Sets of pKa values for Charged Amino Acids
scaledHydropathyGlobal | Protein Scaled Hydropathy Calculations
scaledHydropathyLocal | Calculate the Average Scaled Hydropathy of an Amino Acid Sequence
sequenceCheck | Sequence Check Function
sequenceMap | Sequence Map Function
sequenceMapCoordinates | Sequence Map Coordinates
sequencePlot | Sequence Plot
structuralTendency | Structural Tendency of Amino Acid Residues
structuralTendencyPlot | Plotting Structural Tendency of Amino Acid Sequence
TP53Sequences | Human Cellular tumor antigen p53 and homologs