## template
template_config: RNASeq-human-config.txt

## input
input_file: inst/test-data/SAM634406-subsample_R1.gz 
input_file2: inst/test-data/SAM634406-subsample_R2.gz
paired_ends: TRUE
quality_encoding: illumina1.8

## output
save_dir: SAM634406-subsample
overwrite_save_dir: overwrite 
prepend_str: SAM634406-subsample

## system
num_cores: 4

## aligner
alignReads.sam_id: SAM634406
