Package: hiReadsProcessor
Title: Functions to process LM-PCR reads from 454/Illumina data
Version: 1.28.0
Date: 2019-05-06
Author: Nirav V Malani <malnirav@gmail.com>
Maintainer: Nirav V Malani <malnirav@gmail.com>
Description: hiReadsProcessor contains set of functions which allow
    users to process LM-PCR products sequenced using any platform.
    Given an excel/txt file containing parameters for
    demultiplexing and sample metadata, the functions automate
    trimming of adaptors and identification of the genomic product.
    Genomic products are further processed for QC and abundance
    quantification.
Depends: Biostrings, GenomicAlignments, BiocParallel, hiAnnotator, R
        (>= 3.0)
Imports: sonicLength, dplyr, BiocGenerics, GenomicRanges, readxl,
        methods
License: GPL-3
VignetteBuilder: knitr
Suggests: knitr, testthat
biocViews: Sequencing, Preprocessing
LazyLoad: yes
SystemRequirements: BLAT, UCSC hg18 in 2bit format for BLAT
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/hiReadsProcessor
git_branch: RELEASE_3_13
git_last_commit: daa41a6
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-19 21:53:59 UTC; biocbuild
Built: R 4.1.0; ; 2021-06-02 12:11:18 UTC; unix
