Package: HIPPO
Type: Package
Title: Heterogeneity-Induced Pre-Processing tOol
Version: 1.2.0
Authors@R: c(
  person(given = 'Tae', family = 'Kim', email = 'tk382@uchicago.edu', role = c('aut', 'cre')),
  person(given = 'Mengjie', family = 'Chen', email = 'mengjiechen@uchicago.edu', role = 'aut')
  )
Description: For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering. 
License: GPL (>=2)
Depends: R (>= 3.6.0)
Encoding: UTF-8
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/tk382/HIPPO
BugReports: https://github.com/tk382/HIPPO/issues
Imports: ggplot2, graphics, stats, reshape2, gridExtra, Rtsne, umap,
        dplyr, rlang, magrittr, irlba, Matrix, SingleCellExperiment,
        ggrepel
RoxygenNote: 7.1.0
biocViews: Sequencing, SingleCell, GeneExpression,
        DifferentialExpression, Clustering
git_url: https://git.bioconductor.org/packages/HIPPO
git_branch: RELEASE_3_12
git_last_commit: 90c3d90
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-30
NeedsCompilation: no
Packaged: 2020-10-31 00:21:45 UTC; biocbuild
Author: Tae Kim [aut, cre],
  Mengjie Chen [aut]
Maintainer: Tae Kim <tk382@uchicago.edu>
Built: R 4.0.3; ; 2021-03-29 22:52:29 UTC; unix
