.are_HiCExperiment	checks
.is_comparable	checks
.is_same_bins	checks
.is_same_regions	checks
.is_same_resolution	checks
.is_same_seqinfo	checks
.is_symmetrical	checks
afmhotrColors	palettes
aggregate,HiCExperiment-method	arithmetics
arithmetics	arithmetics
autocorrelate	arithmetics
bbrColors	palettes
bgrColors	palettes
boost	arithmetics
bwrColors	palettes
checks	checks
cisTransRatio	cisTransRatio
coarsen	arithmetics
Contacts	Contacts
contacts_yeast	reexports
contacts_yeast_eco1	reexports
coolerColors	palettes
coverage,HiCExperiment-method	tracks
despeckle	arithmetics
detrend	arithmetics
distanceLaw	Ps
distanceLaw,HiCExperiment,GRanges-method	Ps
distanceLaw,HiCExperiment,missing-method	Ps
distanceLaw,PairsFile,GRanges-method	Ps
distanceLaw,PairsFile,missing-method	Ps
divide	arithmetics
getBorders	getDiamondInsulation
getCompartments	getCompartments
getDiamondInsulation	getDiamondInsulation
getLoops	getLoops
HiContacts-plots	HiContacts-plots
localDistanceLaw	Ps
merge,HiCExperiment,HiCExperiment-method	arithmetics
montage	plotMatrix
montage,AggrHiCExperiment-method	plotMatrix
normalize,HiCExperiment-method	arithmetics
palettes	palettes
plot4C	plot4C
plotMatrix	plotMatrix
plotMatrix,AggrHiCExperiment-method	plotMatrix
plotMatrix,GInteractions-method	plotMatrix
plotMatrix,HiCExperiment-method	plotMatrix
plotMatrix,matrix-method	plotMatrix
plotPs	plotPs
plotPsSlope	plotPs
plotSaddle	plotSaddle
plotScalogram	plotScalogram
Ps	Ps
rainbowColors	palettes
reexports	reexports
scalogram	scalogram
subsample	arithmetics
tracks	tracks
virtual4C	virtual4C
