HiCcompare-package	HiCcompare-package
brain_table	brain_table
centromere_locations	centromere_locations
cooler	cooler
cooler2sparse	cooler2sparse
create.hic.table	create.hic.table
filter_params	filter_params
full2sparse	full2sparse
get_CNV	get_CNV
hg19_blacklist	hg19_blacklist
hg38_blacklist	hg38_blacklist
HiCcompare	HiCcompare-package
hicpro2bedpe	hicpro2bedpe
hic_compare	hic_compare
hic_diff	hic_diff
hic_loess	hic_loess
hic_simulate	hic_simulate
HMEC.chr10	HMEC.chr10
HMEC.chr22	HMEC.chr22
hmec.IS	hmec.IS
KRnorm	KRnorm
make_InteractionSet	make_InteractionSet
manhattan_plot	manhattan_plot
MA_norm	MA_norm
MD.plot1	MD.plot1
MD.plot2	MD.plot2
NHEK.chr10	NHEK.chr10
NHEK.chr22	NHEK.chr22
nhek.IS	nhek.IS
remove_centromere	remove_centromere
SCN	SCN
sim.other.methods	sim.other.methods
sim_matrix	sim_matrix
sparse2full	sparse2full
split_centromere	split_centromere
total_sum	total_sum
visualize_pvals	visualize_pvals
