# Bayesian analysis of Gaussian GWAS data

## Documentation for package ‘GWAS.BAYES’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BGWAS | Performs BGWAS analysis as in the BGWAS manuscript (Williams, J., Xu, S. and Ferreira, M.A., 2023. BGWAS: Bayesian variable selection in linear mixed models with nonlocal priors for genome-wide association studies. BMC Bioinformatics, 24(1), pp.1-20.).
BICOSS | BICOSS for Gaussian Phenotypes
GINA | GINA for Gaussian Phenotypes
kinship | A. Thaliana Kinship matrix
SMA | Performs Single Marker Association tests for both Linear Mixed Models and Linear models.
SNPs | A. Thaliana Genotype matrix
Y | A. Thaliana Simulated Phenotype matrix