Package: GUIDEseq
Type: Package
Title: GUIDE-seq analysis pipeline
Version: 1.20.0
Date: 2020-04-22
Encoding: UTF-8
Author: Lihua Julie Zhu, Michael Lawrence, Ankit Gupta,
       Hervé Pagès , Alper Kucukural, Manuel Garber, Scot A. Wolfe
Maintainer: Lihua Julie Zhu <julie.zhu@umassmed.edu>
Depends: R (>= 3.2.0), GenomicRanges, BiocGenerics
Imports: BiocParallel, Biostrings, CRISPRseek, ChIPpeakAnno,
        data.table, matrixStats, BSgenome, parallel, IRanges (>=
        2.5.5), S4Vectors (>= 0.9.6), GenomicAlignments (>= 1.7.3),
        GenomeInfoDb, Rsamtools, hash, limma,dplyr
biocViews: ImmunoOncology, GeneRegulation, Sequencing, WorkflowStep,
        CRISPR
Suggests: knitr, RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
VignetteBuilder: knitr
Description: The package implements GUIDE-seq analysis workflow
        including functions for obtaining unique insertion 
        sites (proxy of cleavage sites), estimating the locations 
        of the insertion sites, aka, peaks, merging estimated insertion
        sites from plus and minus strand, and performing off target 
        search of the extended regions around insertion sites.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/GUIDEseq
git_branch: RELEASE_3_12
git_last_commit: ccacc7a
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-28 00:43:36 UTC; biocbuild
Built: R 4.0.3; ; 2021-03-31 01:04:55 UTC; unix
