Package: GRridge
Type: Package
Title: Better prediction by use of co-data: Adaptive group-regularized
        ridge regression
Version: 1.12.0
Date: 2019-4-16
Author: Mark A. van de Wiel <mark.vdwiel@vumc.nl>, Putri W. Novianti <p.novianti@vumc.nl>
Maintainer: Mark A. van de Wiel <mark.vdwiel@vumc.nl>
Depends: R (>= 3.2), penalized, Iso, survival, methods,
        graph,stats,glmnet,mvtnorm
Suggests: testthat
Description: This package allows the use of multiple sources of co-data (e.g. external p-values, gene lists, annotation) to improve prediction of binary, continuous and survival response using (logistic, linear or Cox) group-regularized ridge regression. It also facilitates post-hoc variable selection and prediction diagnostics by cross-validation using ROC curves and AUC.
biocViews: Classification, Regression, Survival, Bayesian, RNASeq,
        GenePrediction, GeneExpression, Pathways, GeneSetEnrichment,
        GO, KEGG, GraphAndNetwork, ImmunoOncology
License: GPL-3
LazyLoad: yes
git_url: https://git.bioconductor.org/packages/GRridge
git_branch: RELEASE_3_11
git_last_commit: cda404d
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 02:47:57 UTC; biocbuild
Built: R 4.0.0; ; 2020-05-10 05:26:55 UTC; unix
