# Better prediction by use of co-data: Adaptive group-regularized ridge regression

## Documentation for package ‘GRridge’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

GRridge-package | Implements adaptive group-regularized (logistic) ridge regression by use of co-data.
annotationWurdinger | R-objects related to the mRNAseq data
auc | Area under the ROC curve
coDataWurdinger | R-objects related to the mRNAseq data
CpGann | Contains 5 R-objects, including the data and the binary response
CpGannFarkas | Contains three R-objects, including the data and the binary response
CreatePartition | Creates a partition (groups) of variables
dataFarkas | Contains three R-objects, including the data and the binary response
dataSimlin | Small simulated data set with linear response
dataVerlaat | Contains 5 R-objects, including the data and the binary response
dataWurdinger | R-objects related to the mRNAseq data
datcenFarkas | Contains three R-objects, including the data and the binary response
datcenVerlaat | Contains 5 R-objects, including the data and the binary response
datWurdinger_BC | R-objects related to the mRNAseq data
diffmeanFarkas | Contains 5 R-objects, including the data and the binary response
GRridge | Implements adaptive group-regularized (logistic) ridge regression by use of co-data.
grridge | Group-regularized (logistic) ridge regression
grridgeCV | Returns the cross-validated predictions
hello | Hello, World!
matchGeneSets | Creates a grouping of variables (genes) from gene sets
mergeGroups | Merge groups in a partition
PartitionsSelection | Co-data selection in a Group-regularized ridge regression model
predict | Predictions for new samples
predict.grridge | Predictions for new samples
pvalFarkas | Contains 5 R-objects, including the data and the binary response
respFarkas | Contains three R-objects, including the data and the binary response
respVerlaat | Contains 5 R-objects, including the data and the binary response
respWurdinger | R-objects related to the mRNAseq data
roc | Produces ROC curve for probabilistic classifiers (e.g. logistic regression)