.calcPenalty	dot-calcPenalty
.degreeGeneric	dot-degreeGeneric
.glmSparseNetPrivate	dot-glmSparseNetPrivate
.networkGenericParallel	dot-networkGenericParallel
.networkWorker	dot-networkWorker
balanced.cv.folds	balanced.cv.folds
base.dir	base.dir
biomart.load	biomart.load
build.function.digest	build.function.digest
buildLambda	buildLambda
buildStringNetwork	buildStringNetwork
cache.compression	cache.compression
calculate.combined.score	calculate.combined.score
calculate.result	calculate.result
create.directory.for.cache	create.directory.for.cache
curl.workaround	curl.workaround
cv.glmDegree	cv.glmDegree
cv.glmHub	cv.glmHub
cv.glmOrphan	cv.glmOrphan
cv.glmSparseNet	cv.glmSparseNet
degreeCor	degreeCor
degreeCov	degreeCov
digest.cache	digest.cache
downloadFileLocal	downloadFileLocal
ensemblGeneNames	ensemblGeneNames
geneNames	geneNames
glmDegree	glmDegree
glmHub	glmHub
glmOrphan	glmOrphan
glmSparseNet	glmSparseNet
glmSparseNet.options	glmSparseNet.options
hallmarks	hallmarks
heuristicScale	heuristicScale
hubHeuristic	hubHeuristic
my.colors	my.colors
my.symbols	my.symbols
networkCorParallel	networkCorParallel
networkCovParallel	networkCovParallel
networkOptions	networkOptions
orphanHeuristic	orphanHeuristic
protein2EnsemblGeneNames	protein2EnsemblGeneNames
run.cache	run.cache
run.cache,function-method	run.cache-function-method
save.run.cache	save.run.cache
separate2GroupsCox	separate2GroupsCox
show.message	show.message
string.network.700.cache	string.network.700.cache
stringDBhomoSapiens	stringDBhomoSapiens
tempdir.cache	tempdir.cache
write.readme	write.readme
