add_title	add_title
append_cp	append_cp
append_label_position	append_label_position
assign_deseq2	assign_deseq2
carrow	carrow
combine_with_bnlearn	combine_with_bnlearn
convert_id	convert_id
create_test_module	create_test_module
create_test_network	create_test_network
create_test_pathway	create_test_pathway
edge_matrix	edge_matrix
edge_numeric	edge_numeric
edge_numeric_sum	edge_numeric_sum
geom_kegg	geom_kegg
geom_node_rect	geom_node_rect
geom_node_rect_kegg	geom_node_rect_kegg
geom_node_rect_multi	geom_node_rect_multi
geom_node_shadowtext	geom_node_shadowtext
get_module_attribute	get_module_attribute
get_module_attribute,kegg_module-method	get_module_attribute-kegg_module-method
get_network_attribute	get_network_attribute
get_network_attribute,kegg_network-method	get_network_attribute-kegg_network-method
ggkegg	ggkegg
ggkeggsave	ggkeggsave
ggplot_add.geom_kegg	ggplot_add.geom_kegg
ggplot_add.geom_node_rect_kegg	ggplot_add.geom_node_rect_kegg
ggplot_add.geom_node_rect_multi	ggplot_add.geom_node_rect_multi
ggplot_add.overlay_raw_map	ggplot_add.overlay_raw_map
ggplot_add.stamp	ggplot_add.stamp
highlight_entities	highlight_entities
highlight_module	highlight_module
highlight_set_edges	highlight_set_edges
highlight_set_nodes	highlight_set_nodes
module	module
module_abundance	module_abundance
module_completeness	module_completeness
module_text	module_text
multi_pathway_native	multi_pathway_native
network	network
network_graph	network_graph
node_matrix	node_matrix
node_numeric	node_numeric
obtain_sequential_module_definition	obtain_sequential_module_definition
output_overlay_image	output_overlay_image
overlay_raw_map	overlay_raw_map
pathway	pathway
pathway_abundance	pathway_abundance
pathway_info	pathway_info
plot_kegg_network	plot_kegg_network
plot_module_blocks	plot_module_blocks
plot_module_text	plot_module_text
process_line	process_line
process_reaction	process_reaction
rawMap	rawMap
rawValue	rawValue
return_line_compounds	return_line_compounds
stamp	stamp
