allsnps	externalize
casting	rsid-class
clipPCs	clipPCs
clipPCs,RangedSummarizedExperiment,numeric,logical-method	clipPCs
clipPCs,RangedSummarizedExperiment,numeric,missing-method	clipPCs
clipPCs,smlSet,numeric,logical-method	clipPCs
clipPCs,smlSet,numeric,missing-method	clipPCs
clipPCs,SummarizedExperiment,numeric,logical-method	clipPCs
clipPCs,SummarizedExperiment,numeric,missing-method	clipPCs
combine,smlSet,smlSet-method	smlSet-class
dropMonomorphies	MAFfilter
exprs,smlSet-method	smlSet-class
externalize	externalize
genesym	rsid-class
genesym,character-method	rsid-class
genesym-class	rsid-class
getSS	make_smlSet
GTFfilter	MAFfilter
MAFfilter	MAFfilter
make_smlSet	make_smlSet
nsFilter,smlSet-method	smlSet-class
permEx	smlSet-class
permEx,smlSet-method	smlSet-class
plot_EvG	plot_EvG
plot_EvG,genesym,rsid,smlSet-method	plot_EvG
plot_EvG,probeId,rsid,smlSet-method	plot_EvG
probeId	rsid-class
probeId,character-method	rsid-class
probeId-class	rsid-class
regressOut	clipPCs
rsid	rsid-class
rsid,character-method	rsid-class
rsid,numeric-method	rsid-class
rsid-class	rsid-class
smList	smlSet-class
smList,smlSet-method	smlSet-class
smlSet-class	smlSet-class
[,smlSet,ANY,ANY,ANY-method	smlSet-class
