geva-package	geva-package
$,GEVAResults-method	GEVAResults-class
$,SVAttribute-method	SVAttribute-class
$,SVTable-method	SVTable-class
analysis.params	generics
analysis.params,GEVAGroupedSummary-method	GEVAGroupedSummary-class
analysis.params,GEVAGroupSet-method	GEVAGroupSet-class
analysis.params,GEVAInput-method	GEVAInput-class
analysis.params,GEVAResults-method	GEVAResults-class
analysis.params,GEVASummary-method	GEVASummary-class
as.array.GEVAInput	GEVAInput-class
as.character.SVAttribute	SVAttribute-class
as.data.frame.GEVAGroupSet	GEVAGroupSet-class
as.data.frame.SVTable	SVTable-class
as.expression.GEVAGroupedSummary	GEVAGroupedSummary-class
as.expression.GEVAGroupSet	GEVAGroupSet-class
as.expression.GEVAQuantiles	GEVAQuantiles-class
as.expression.GEVAResults	GEVAResults-class
as.expression.GEVASummary	GEVASummary-class
as.list.TypedList	TypedList-class
as.matrix.GEVAGroupedSummary	GEVAGroupedSummary-class
as.matrix.GEVASummary	GEVASummary-class
as.matrix.SVTable	SVTable-class
as.SVTable	generics
as.SVTable.data.frame	SVTable-class
as.SVTable.GEVAGroupSet	GEVAGroupSet-class
as.SVTable.GEVAQuantiles	GEVAQuantiles-class
as.SVTable.matrix	SVTable-class
as.SVTable.SVTable	SVTable-class
as.typed.list.list	TypedList-class
as.typed.list.TypedList	TypedList-class
as.typed.list.vector	TypedList-class
as.vector.SVAttribute	SVAttribute-class
centroids	generics
centroids,GEVAGroupSet-method	GEVAGroupSet-class
classification.table	generics
classification.table,GEVAGroupSet-method	GEVAGroupSet-class
classification.table,GEVAQuantiles-method	GEVAQuantiles-class
classification.table<-	generics
classification.table<-,GEVAGroupSet,data.frame-method	GEVAGroupSet-class
classification.table<-,GEVAQuantiles,data.frame-method	GEVAQuantiles-class
cluster.method	generics
cluster.method,GEVACluster-method	GEVACluster-class
cluster.method,GEVAGroupedSummary-method	GEVAGroupedSummary-class
cluster.method,GEVAGroupSet-method	GEVAGroupSet-class
cluster.method,GEVAQuantiles-method	GEVAQuantiles-class
color.values.GEVAGroupSet	GEVAGroupSet-class
dim,GEVAInput-method	GEVAInput-class
dim,GEVAQuantiles-method	GEVAQuantiles-class
dim,GEVAResults-method	GEVAResults-class
dim,SVAttribute-method	SVAttribute-class
dim,SVTable-method	SVTable-class
dimnames,GEVAInput-method	GEVAInput-class
dimnames,GEVAResults-method	GEVAResults-class
dimnames,SVTable-method	SVTable-class
dimnames<-,GEVAInput,list-method	GEVAInput-class
elem.class	generics
elem.class,TypedList-method	TypedList-class
elem.class<-	generics
elem.class<-,TypedList,character-method	TypedList-class
factors	generics
factors,GEVAInput-method	GEVAInput-class
factors,GEVASummary-method	GEVASummary-class
factors<-	generics
factors<-,GEVAInput,character-method	GEVAInput-class
factors<-,GEVAInput,factor-method	GEVAInput-class
factors<-,GEVASummary,character-method	GEVASummary-class
factors<-,GEVASummary,factor-method	GEVASummary-class
featureTable	generics
featureTable,GEVAGroupSet-method	GEVAGroupSet-class
featureTable,GEVAInput-method	GEVAInput-class
featureTable,GEVAResults-method	GEVAResults-class
featureTable,GEVASummary-method	GEVASummary-class
featureTable<-	generics
featureTable<-,GEVAInput,data.frame-method	GEVAInput-class
format.SVTable	SVTable-class
generics	generics
get.distance.method	generics
get.summary.method	generics
get.summary.method.GEVASummary	GEVASummary-class
get.variation.method	generics
get.variation.method.GEVASummary	GEVASummary-class
geva	geva-package
geva.cluster	geva.cluster
geva.dcluster	geva.dcluster
geva.finalize	geva.finalize
geva.hcluster	geva.hcluster
geva.ideal.example	geva.ideal.example
geva.input.correct	geva.input.correct
geva.input.filter	geva.input.correct
geva.input.rename.rows	geva.input.correct
geva.merge.input	geva.merge.input
geva.quantiles	geva.quantiles
geva.quick	geva.quick
geva.read.tables	geva.merge.input
geva.summarize	geva.summarize
GEVACluster-class	GEVACluster-class
GEVAGroupedSummary-class	GEVAGroupedSummary-class
GEVAGroupSet-class	GEVAGroupSet-class
GEVAInput-class	GEVAInput-class
GEVAQuantiles-class	GEVAQuantiles-class
GEVAQuantilesAdjusted-class	GEVAQuantilesAdjusted-class
GEVAResults-class	GEVAResults-class
GEVASummary-class	GEVASummary-class
group.rels	generics
group.rels,GEVAQuantilesAdjusted-method	GEVAQuantilesAdjusted-class
groups	generics
groups,GEVAGroupSet-method	GEVAGroupSet-class
groupsets	generics
groupsets,GEVAGroupedSummary-method	GEVAGroupedSummary-class
groupsets,GEVASummary-method	GEVASummary-class
groupsets<-	generics
groupsets<-,GEVAGroupedSummary,GEVAGroupSet-method	GEVAGroupedSummary-class
groupsets<-,GEVASummary,GEVAGroupSet-method	GEVASummary-class
groupsets<-,GEVASummary,TypedList-method	GEVASummary-class
head.GEVAInput	GEVAInput-class
head.GEVAResults	GEVAResults-class
head.SVTable	SVTable-class
infolist	generics
infolist,GEVAGroupSet,character-method	GEVAGroupSet-class
infolist,GEVAGroupSet,missing-method	GEVAGroupSet-class
infolist,GEVAInput,character-method	GEVAInput-class
infolist,GEVAInput,missing-method	GEVAInput-class
infolist,GEVAResults,character-method	GEVAResults-class
infolist,GEVAResults,missing-method	GEVAResults-class
infolist,GEVASummary,missing-method	GEVASummary-class
infolist<-	generics
infolist<-,GEVAGroupSet,list-method	GEVAGroupSet-class
infolist<-,GEVAInput,list-method	GEVAInput-class
infolist<-,GEVASummary,list-method	GEVASummary-class
inputdata	generics
inputdata,GEVAInput-method	GEVAInput-class
inputdata,GEVAResults-method	GEVAResults-class
inputdata,GEVASummary-method	GEVASummary-class
inputnames	generics
inputnames,GEVAInput-method	GEVAInput-class
inputnames,GEVASummary-method	GEVASummary-class
inputvalues	generics
inputvalues,GEVAInput-method	GEVAInput-class
inputvalues,GEVAResults-method	GEVAResults-class
inputvalues,GEVASummary-method	GEVASummary-class
inputweights	generics
inputweights,GEVAInput,logical-method	GEVAInput-class
inputweights,GEVAInput,missing-method	GEVAInput-class
inputweights,GEVAResults,logical-method	GEVAResults-class
inputweights,GEVAResults,missing-method	GEVAResults-class
inputweights,GEVASummary,logical-method	GEVASummary-class
inputweights,GEVASummary,missing-method	GEVASummary-class
is.na.SVTable	SVTable-class
length,GEVAGroupSet-method	GEVAGroupSet-class
length,GEVAInput-method	GEVAInput-class
length,GEVAResults-method	GEVAResults-class
length,SVTable-method	SVTable-class
levels.GEVAGroupSet	GEVAGroupSet-class
levels.GEVAInput	GEVAInput-class
levels.GEVAResults	GEVAResults-class
lines.GEVACluster	GEVACluster-class
lines.GEVAGroupedSummary	GEVAGroupedSummary-class
lines.GEVAQuantiles	GEVAQuantiles-class
names,GEVAGroupSet-method	GEVAGroupSet-class
names,GEVAInput-method	GEVAInput-class
names,GEVAResults-method	GEVAResults-class
names,SVAttribute-method	SVAttribute-class
names,SVTable-method	SVTable-class
offsets	generics
offsets,GEVAGroupSet-method	GEVAGroupSet-class
options.cl.score.method	geva.cluster
options.cluster.method	geva.cluster
options.dcluster.method	geva.dcluster
options.distance	geva.cluster
options.factoring.p.adjust	geva.finalize
options.hc.method	geva.hcluster
options.hc.metric	geva.hcluster
options.quantiles	geva.quantiles
options.summary	geva.summarize
options.variation	geva.summarize
plot,GEVACluster,SVTable-method	GEVACluster-class
plot,GEVAGroupedSummary,missing-method	GEVAGroupedSummary-class
plot,GEVAGroupSet,GEVAGroupSet-method	GEVAGroupSet-class
plot,GEVAGroupSet,missing-method	GEVAGroupSet-class
plot,GEVAGroupSet,SVTable-method	GEVAGroupSet-class
plot,GEVAInput,missing-method	GEVAInput-class
plot,GEVAQuantiles,SVTable-method	GEVAQuantiles-class
plot,GEVAResults,missing-method	GEVAResults-class
plot,GEVASummary,missing-method	GEVASummary-class
plot,SVTable,GEVAGroupSet-method	GEVAGroupSet-class
plot,SVTable,missing-method	SVTable-class
points.GEVAGroupedSummary	GEVAGroupedSummary-class
points.GEVAGroupSet	GEVAGroupSet-class
points.GEVAResults	GEVAResults-class
points.SVTable	SVTable-class
qareasizes	generics
qareasizes,GEVAQuantiles-method	GEVAQuantiles-class
qcount	generics
qcount,GEVAQuantiles-method	GEVAQuantiles-class
qindexes	generics
qindexes,GEVAQuantiles-method	GEVAQuantiles-class
quantiles	generics
quantiles,GEVAGroupedSummary-method	GEVAGroupedSummary-class
quantiles,GEVAQuantiles-method	GEVAQuantiles-class
quantiles,GEVAResults-method	GEVAResults-class
quantiles,GEVASummary-method	GEVASummary-class
quantiles.method	generics
quantiles.method,GEVAQuantiles-method	GEVAQuantiles-class
results.table	generics
results.table,GEVAResults-method	GEVAResults-class
scores	generics
scores,GEVAGroupSet,character-method	GEVAGroupSet-class
scores,GEVAGroupSet,missing-method	GEVAGroupSet-class
show,GEVACluster-method	GEVACluster-class
show,GEVAGroupedSummary-method	GEVAGroupedSummary-class
show,GEVAGroupSet-method	GEVAGroupSet-class
show,GEVAInput-method	GEVAInput-class
show,GEVAQuantiles-method	GEVAQuantiles-class
show,GEVAQuantilesAdjusted-method	GEVAQuantilesAdjusted-class
show,GEVAResults-method	GEVAResults-class
show,GEVASummary-method	GEVASummary-class
show,SVAttribute-method	SVAttribute-class
show,SVTable-method	SVTable-class
show,TypedList-method	TypedList-class
summary.SVAttribute	SVAttribute-class
summary.SVTable	SVTable-class
sv	generics
sv,GEVAGroupSet-method	GEVAGroupSet-class
sv,GEVAResults-method	GEVAResults-class
sv,SVAttribute-method	SVAttribute-class
sv,SVTable-method	SVTable-class
sv.data	generics
sv.data,GEVAGroupSet-method	GEVAGroupSet-class
sv.data,GEVAResults-method	GEVAResults-class
sv.data,SVAttribute-method	SVAttribute-class
sv.data,SVTable-method	SVTable-class
sv.scores	generics
sv.scores,GEVAQuantiles-method	GEVAQuantiles-class
svattr	generics
svattr,character,character-method	SVAttribute-class
svattr,integer,integer-method	SVAttribute-class
svattr,numeric,numeric-method	SVAttribute-class
SVAttribute	SVAttribute-class
SVAttribute-class	SVAttribute-class
SVChrAttribute	SVAttribute-class
SVChrAttribute-class	SVAttribute-class
SVIntAttribute	SVAttribute-class
SVIntAttribute-class	SVAttribute-class
SVNumAttribute	SVAttribute-class
SVNumAttribute-class	SVAttribute-class
SVTable	SVTable-class
svtable	SVTable-class
SVTable-class	SVTable-class
tail.GEVAInput	GEVAInput-class
tail.SVTable	SVTable-class
top.genes	top.genes
typed.list	TypedList-class
TypedList-class	TypedList-class
variation	generics
variation.SVAttribute	SVAttribute-class
variation.SVTable	SVTable-class
with.SVTable	SVTable-class
[,GEVAInput,ANY,ANY,ANY-method	GEVAInput-class
[,GEVAQuantiles,ANY,ANY,ANY-method	GEVAQuantiles-class
[,GEVAResults,ANY,ANY,ANY-method	GEVAResults-class
[,SVAttribute,ANY,ANY,ANY-method	SVAttribute-class
[,SVTable,ANY,ANY,ANY-method	SVTable-class
[,TypedList,ANY,missing,missing-method	TypedList-class
[<-,TypedList,character,missing-method	TypedList-class
