aggregateCounts	aggregateCounts
analyte	NanoStringGeoMxSet-class
analyte,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
as.Seurat	as.Seurat
as.Seurat.NanoStringGeoMxSet	as.Seurat
as.SpatialExperiment	as.SpatialExperiment
as.SpatialExperiment.NanoStringGeoMxSet	as.SpatialExperiment
checkQCFlags	checkQCFlags
checkQCFlags,NanoStringGeoMxSet-method	checkQCFlags-NanoStringGeoMxSet-method
class:NanoStringGeoMxSet	NanoStringGeoMxSet-class
coerce,ExpressionSet,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
compareToConfig	compareToConfig
computeNormalizationFactors	computeNormalizationFactors
countsShiftedByOne	countsShiftedByOne
design,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
design<-,NanoStringGeoMxSet,ANY-method	NanoStringGeoMxSet-class
design<-,NanoStringGeoMxSet,formula-method	NanoStringGeoMxSet-class
design<-,NanoStringGeoMxSet,NULL-method	NanoStringGeoMxSet-class
dimLabels,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
dimLabels<-,NanoStringGeoMxSet,character-method	NanoStringGeoMxSet-class
featureType	NanoStringGeoMxSet-class
featureType,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
featureType<-	NanoStringGeoMxSet-class
featureType<-,NanoStringGeoMxSet,character-method	NanoStringGeoMxSet-class
hkNames	hkNames
iggNames	iggNames
logtBase	logtBase
mixedModelDE	mixedModelDE
NanoStringGeoMxSet	NanoStringGeoMxSet-class
NanoStringGeoMxSet,environment-method	NanoStringGeoMxSet-class
NanoStringGeoMxSet,ExpressionSet-method	NanoStringGeoMxSet-class
NanoStringGeoMxSet,matrix-method	NanoStringGeoMxSet-class
NanoStringGeoMxSet,missing-method	NanoStringGeoMxSet-class
NanoStringGeoMxSet,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
NanoStringGeoMxSet-class	NanoStringGeoMxSet-class
ngeoMean	ngeoMean
ngeoSD	ngeoSD
normalize,NanoStringGeoMxSet-method	normalize-NanoStringGeoMxSet-method
plotConcordance	plotConcordance
plotNormFactorConcordance	plotNormFactorConcordance
qcProteinSignal	qcProteinSignal
qcProteinSignalNames	qcProteinSignalNames
readDccFile	readDccFile
readNanoStringGeoMxSet	readNanoStringGeoMxSet
readPKCFile	readPKCFile
sData	NanoStringGeoMxSet-class
sData,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
setBackgroundQCFlags	setBackgroundQCFlags
setBioProbeQCFlags	setBioProbeQCFlags
setGeoMxQCFlags	setGeoMxQCFlags
setQCFlags,NanoStringGeoMxSet-method	setQCFlags-NanoStringGeoMxSet-method
setSegmentQCFlags	setSegmentQCFlags
setSeqQCFlags	setSeqQCFlags
shiftCountsOne	shiftCountsOne
show,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
signatureGroups	NanoStringGeoMxSet-class
signatureGroups,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
signatures	NanoStringGeoMxSet-class
signatures,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
signatures<-	NanoStringGeoMxSet-class
signatures<-,NanoStringGeoMxSet,SignatureSet-method	NanoStringGeoMxSet-class
signatureScores	NanoStringGeoMxSet-class
signatureScores,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
summarizeNegatives	summarizeNegatives
svarLabels	NanoStringGeoMxSet-class
svarLabels,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
updateGeoMxSet	updateGeoMxSet
updateObject,NanoStringGeoMxSet-method	NanoStringGeoMxSet-class
writeNanoStringGeoMxSet	writeNanoStringGeoMxSet
