# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Dec 11 06:49:43 2023
# ------------------------------------------------

package:
  name: bioconductor-genomicozone
  version: 1.16.0
source:
  md5: c975a4b1c29d471efe90a5bba68247bb
  url:
    - https://bioarchive.galaxyproject.org/GenomicOZone_1.16.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/GenomicOZone/GenomicOZone_1.16.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/GenomicOZone_1.16.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-genomicozone/bioconductor-genomicozone_1.16.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-genomicozone >=1.16.0,<1.17.0a0
  string: r43hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.2.1 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-annotationdbi 1.64.1 r43hdfd78af_0
    - bioconductor-annotationfilter 1.26.0 r43hdfd78af_0
    - bioconductor-biobase 2.62.0 r43ha9d7317_1
    - bioconductor-biocfilecache 2.10.1 r43hdfd78af_0
    - bioconductor-biocgenerics 0.48.1 r43hdfd78af_2
    - bioconductor-biocio 1.12.0 r43hdfd78af_0
    - bioconductor-biocparallel 1.36.0 r43hf17093f_1
    - bioconductor-biomart 2.58.0 r43hdfd78af_0
    - bioconductor-biostrings 2.70.1 r43ha9d7317_1
    - bioconductor-biovizbase 1.50.0 r43ha9d7317_0
    - bioconductor-bsgenome 1.70.1 r43hdfd78af_0
    - bioconductor-data-packages 20231203 hdfd78af_0
    - bioconductor-delayedarray 0.28.0 r43ha9d7317_1
    - bioconductor-ensembldb 2.26.0 r43hdfd78af_0
    - bioconductor-genomeinfodb 1.38.1 r43hdfd78af_1
    - bioconductor-genomeinfodbdata 1.2.11 r43hdfd78af_1
    - bioconductor-genomicalignments 1.38.0 r43ha9d7317_0
    - bioconductor-genomicfeatures 1.54.1 r43hdfd78af_0
    - bioconductor-genomicranges 1.54.1 r43ha9d7317_1
    - bioconductor-ggbio 1.50.0 r43hdfd78af_0
    - bioconductor-graph 1.80.0 r43ha9d7317_0
    - bioconductor-iranges 2.36.0 r43ha9d7317_1
    - bioconductor-keggrest 1.42.0 r43hdfd78af_0
    - bioconductor-matrixgenerics 1.14.0 r43hdfd78af_1
    - bioconductor-organismdbi 1.44.0 r43hdfd78af_0
    - bioconductor-protgenerics 1.34.0 r43hdfd78af_0
    - bioconductor-rbgl 1.78.0 r43hf17093f_0
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    - bioconductor-rtracklayer 1.62.0 r43ha9d7317_0
    - bioconductor-s4arrays 1.2.0 r43ha9d7317_1
    - bioconductor-s4vectors 0.40.2 r43ha9d7317_1
    - bioconductor-sparsearray 1.2.2 r43ha9d7317_1
    - bioconductor-summarizedexperiment 1.32.0 r43hdfd78af_0
    - bioconductor-variantannotation 1.48.1 r43ha9d7317_0
    - bioconductor-xvector 0.42.0 r43ha9d7317_1
    - bioconductor-zlibbioc 1.48.0 r43ha9d7317_1
    - bwidget 1.9.14 ha770c72_1
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    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
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    - gcc_impl_linux-64 13.2.0 h338b0a0_3
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    - icu 73.2 h59595ed_0
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    - libdeflate 1.19 hd590300_0
    - libedit 3.1.20191231 he28a2e2_2
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    - libexpat 2.5.0 hcb278e6_1
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    - libgcc-devel_linux-64 13.2.0 ha9c7c90_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgfortran-ng 13.2.0 h69a702a_3
    - libgfortran5 13.2.0 ha4646dd_3
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    - libstdcxx-devel_linux-64 13.2.0 ha9c7c90_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - libtiff 4.6.0 ha9c0a0a_2
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    - libxml2 2.11.6 h232c23b_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 h59595ed_2
    - oniguruma 6.9.9 hd590300_0
    - openssl 3.2.0 hd590300_1
    - pandoc 3.1.3 h32600fe_0
    - pango 1.50.14 ha41ecd1_2
    - pcre2 10.42 hcad00b1_0
    - pip 23.3.1 pyhd8ed1ab_0
    - pixman 0.42.2 h59595ed_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.12.0 hab00c5b_0_cpython
    - python_abi 3.12 4_cp312
    - pyyaml 6.0.1 py312h98912ed_1
    - r-abind 1.4_5 r43hc72bb7e_1005
    - r-askpass 1.2.0 r43h57805ef_0
    - r-assertthat 0.2.1 r43hc72bb7e_4
    - r-backports 1.4.1 r43h57805ef_2
    - r-base 4.3.2 hb8ee39d_1
    - r-base64enc 0.1_3 r43h57805ef_1006
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-biocmanager 1.30.22 r43hc72bb7e_0
    - r-bit 4.0.5 r43h57805ef_1
    - r-bit64 4.0.5 r43h57805ef_2
    - r-bitops 1.0_7 r43h57805ef_2
    - r-blob 1.2.4 r43hc72bb7e_1
    - r-broom 1.0.5 r43hc72bb7e_1
    - r-broom.helpers 1.14.0 r43hc72bb7e_0
    - r-bslib 0.6.1 r43hc72bb7e_0
    - r-cachem 1.0.8 r43h57805ef_1
    - r-checkmate 2.3.0 r43h57805ef_0
    - r-ckmeans.1d.dp 4.3.5 r43ha503ecb_0
    - r-cli 3.6.2 r43ha503ecb_0
    - r-clipr 0.8.0 r43hc72bb7e_2
    - r-cluster 2.1.6 r43h61816a4_0
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-colorspace 2.1_0 r43h57805ef_1
    - r-cpp11 0.4.7 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-curl 5.1.0 r43hf9611b0_0
    - r-data.table 1.14.10 r43h029312a_0
    - r-dbi 1.1.3 r43hc72bb7e_2
    - r-dbplyr 2.4.0 r43hc72bb7e_0
    - r-deldir 2.0_2 r43h61816a4_0
    - r-dichromat 2.0_0.1 r43ha770c72_2
    - r-digest 0.6.33 r43ha503ecb_0
    - r-dplyr 1.1.4 r43ha503ecb_0
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    - r-evaluate 0.23 r43hc72bb7e_0
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    - r-farver 2.1.1 r43ha503ecb_2
    - r-fastmap 1.1.1 r43ha503ecb_1
    - r-filelock 1.0.3 r43h57805ef_0
    - r-fontawesome 0.5.2 r43hc72bb7e_0
    - r-forcats 1.0.0 r43hc72bb7e_1
    - r-foreign 0.8_86 r43h57805ef_0
    - r-formatr 1.14 r43hc72bb7e_1
    - r-formula 1.2_5 r43hc72bb7e_1
    - r-fs 1.6.3 r43ha503ecb_0
    - r-futile.logger 1.4.3 r43hc72bb7e_1005
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    - r-ggally 2.2.0 r43hc72bb7e_0
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    - r-gridextra 2.3 r43hc72bb7e_1005
    - r-gtable 0.3.4 r43hc72bb7e_0
    - r-haven 2.5.4 r43ha503ecb_0
    - r-highr 0.10 r43hc72bb7e_1
    - r-hmisc 5.1_1 r43h61816a4_0
    - r-hms 1.1.3 r43hc72bb7e_1
    - r-htmltable 2.4.2 r43hc72bb7e_0
    - r-htmltools 0.5.7 r43ha503ecb_0
    - r-htmlwidgets 1.6.4 r43hc72bb7e_0
    - r-httr 1.4.7 r43hc72bb7e_0
    - r-interp 1.1_5 r43hcf54a89_0
    - r-isoband 0.2.7 r43ha503ecb_2
    - r-jpeg 0.1_10 r43h66f22b2_5
    - r-jquerylib 0.1.4 r43hc72bb7e_2
    - r-jsonlite 1.8.8 r43h57805ef_0
    - r-knitr 1.45 r43hc72bb7e_0
    - r-labeling 0.4.3 r43hc72bb7e_0
    - r-labelled 2.12.0 r43hc72bb7e_0
    - r-lambda.r 1.2.4 r43hc72bb7e_3
    - r-lattice 0.22_5 r43h57805ef_0
    - r-latticeextra 0.6_30 r43hc72bb7e_2
    - r-lazyeval 0.2.2 r43h57805ef_4
    - r-lifecycle 1.0.4 r43hc72bb7e_0
    - r-lsr 0.5.2 r43hc72bb7e_2
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-mass 7.3_60 r43h57805ef_1
    - r-matrix 1.6_4 r43h316c678_0
    - r-matrixstats 1.1.0 r43h57805ef_0
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mgcv 1.9_0 r43h316c678_0
    - r-mime 0.12 r43h57805ef_2
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-nlme 3.1_164 r43h61816a4_0
    - r-nnet 7.3_19 r43h57805ef_1
    - r-openssl 2.1.1 r43hb353fa6_0
    - r-patchwork 1.1.3 r43hc72bb7e_0
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-plogr 0.2.0 r43hc72bb7e_1005
    - r-plyr 1.8.9 r43ha503ecb_0
    - r-png 0.1_8 r43h81d01c5_1
    - r-prettyunits 1.2.0 r43hc72bb7e_0
    - r-progress 1.2.3 r43hc72bb7e_0
    - r-purrr 1.0.2 r43h57805ef_0
    - r-r6 2.5.1 r43hc72bb7e_2
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    - r-rbibutils 2.2.16 r43h57805ef_0
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
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    - r-restfulr 0.0.15 r43h56115f1_3
    - r-rjson 0.2.21 r43ha503ecb_3
    - r-rlang 1.1.2 r43ha503ecb_0
    - r-rmarkdown 2.25 r43hc72bb7e_0
    - r-rpart 4.1.23 r43h57805ef_0
    - r-rsqlite 2.3.4 r43ha503ecb_0
    - r-rstudioapi 0.15.0 r43hc72bb7e_0
    - r-sass 0.4.8 r43ha503ecb_0
    - r-scales 1.3.0 r43hc72bb7e_0
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-stringi 1.8.2 r43h9facbd6_0
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    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-vroom 1.6.5 r43ha503ecb_0
    - r-withr 2.5.2 r43hc72bb7e_0
    - r-xfun 0.41 r43ha503ecb_0
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    - r-xml2 1.3.6 r43h1ad5fc0_0
    - r-yaml 2.3.7 r43h57805ef_1
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 68.2.2 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_16
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h0c5db8f_5
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.12.3 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.42.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.1.1 hd590300_0
    - xorg-libsm 1.2.4 h7391055_0
    - xorg-libx11 1.8.7 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_1
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.3 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.5 hfc55251_0
  run:
    - bioconductor-biomart >=2.58.0,<2.59.0
    - bioconductor-genomeinfodb >=1.38.0,<1.39.0
    - bioconductor-genomicranges >=1.54.0,<1.55.0
    - bioconductor-ggbio >=1.50.0,<1.51.0
    - bioconductor-iranges >=2.36.0,<2.37.0
    - bioconductor-s4vectors >=0.40.0,<0.41.0
    - r-base >=4.3,<4.4.0a0
    - r-ckmeans.1d.dp >=4.3.0
    - r-ggplot2
    - r-gridextra
    - r-lsr
    - r-plyr
    - r-rdpack
test:
  commands:
    - $R -e "library('GenomicOZone')"
about:
  description: The package clusters gene activity along chromosome into zones, detects
    differential zones as outstanding, and visualizes maps of outstanding zones across
    the genome. It enables characterization of effects on multiple genes within adaptive
    genomic neighborhoods, which could arise from genome reorganization, structural
    variation, or epigenome alteration. It guarantees cluster optimality, linear runtime
    to sample size, and reproducibility. One can apply it on genome-wide activity
    measurements such as copy number, transcriptomic, proteomic, and methylation data.
  home: https://bioconductor.org/packages/3.18/bioc/html/GenomicOZone.html
  license: LGPL (>=3)
  license_file: /opt/conda/conda-bld/bioconductor-genomicozone_1702294751076/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/R/share/licenses/LGPL-3
  summary: Delineate outstanding genomic zones of differential gene activity
extra:
  copy_test_source_files: true
  final: true
