Package: GenomeInfoDb
Title: Utilities for manipulating chromosome names, including modifying
        them to follow a particular naming style
Description: Contains data and functions that
	define and allow translation between different chromosome
	sequence naming conventions (e.g., "chr1" versus "1"),
	including a function that attempts to place sequence names in
	their natural, rather than lexicographic, order.
biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation
URL: https://bioconductor.org/packages/GenomeInfoDb
Video: http://youtu.be/wdEjCYSXa7w
BugReports: https://github.com/Bioconductor/GenomeInfoDb/issues
Version: 1.36.1
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Sonali", "Arora", role="aut"),
	person("Martin", "Morgan", role="aut"),
	person("Marc", "Carlson", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Prisca Chidimma", "Maduka", role="ctb"),
	person("Atuhurira Kirabo", "Kakopo", role="ctb"),
	person("Haleema", "Khan", role="ctb",
		comment="vignette translation from Sweave to Rmarkdown / HTML"),
	person("Emmanuel Chigozie", "Elendu", role="ctb"))
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=
        0.25.12), IRanges (>= 2.13.12)
Imports: stats, stats4, utils, RCurl, GenomeInfoDbData
Suggests: GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome,
        BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
        BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
VignetteBuilder: knitr
Collate: utils.R list_ftp_dir.R rankSeqlevels.R NCBI-utils.R
        UCSC-utils.R Ensembl-utils.R getChromInfoFromNCBI.R
        getChromInfoFromUCSC.R getChromInfoFromEnsembl.R
        loadTaxonomyDb.R mapGenomeBuilds.R seqinfo.R Seqinfo-class.R
        seqlevelsStyle.R seqlevels-wrappers.R GenomeDescription-class.R
        zzz.R
git_url: https://git.bioconductor.org/packages/GenomeInfoDb
git_branch: RELEASE_3_17
git_last_commit: df7f76e
git_last_commit_date: 2023-06-20
Date/Publication: 2023-06-21
NeedsCompilation: no
Packaged: 2023-06-21 20:48:57 UTC; biocbuild
Author: Sonali Arora [aut],
  Martin Morgan [aut],
  Marc Carlson [aut],
  Hervé Pagès [aut, cre],
  Prisca Chidimma Maduka [ctb],
  Atuhurira Kirabo Kakopo [ctb],
  Haleema Khan [ctb] (vignette translation from Sweave to Rmarkdown /
    HTML),
  Emmanuel Chigozie Elendu [ctb]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Built: R 4.3.0; ; 2023-07-10 19:35:09 UTC; unix
