Package: GenomAutomorphism
Title: Compute the automorphisms between DNA's Abelian group
        representations
Version: 1.0.0
Authors@R: 
    person( given = "Robersy",
            family = "Sanchez",
            role = c("aut", "cre"),
            email = "genomicmath@gmail.com",
            comment = c(ORCID = "0000-0002-5246-1453"))
URL: https://github.com/genomaths/GenomAutomorphism
BugReports: https://github.com/genomaths/GenomAutomorphism/issues
Description: 
            This is a R package to compute the automorphisms between pairwise 
            aligned DNA sequences represented as elements from a Genomic 
            Abelian group. In a general scenario, from genomic regions till 
            the whole genomes from a given population (from any species or 
            close related species) can be algebraically represented as a 
            direct sum of cyclic groups or more specifically Abelian p-groups. 
            Basically, we propose the representation of multiple sequence 
            alignments of length N bp as element of a finite Abelian group 
            created by the direct sum of homocyclic Abelian group of 
            prime-power order.
Depends: R (>= 4.2),
License: Artistic-2.0
Encoding: UTF-8
biocViews: MathematicalBiology, ComparativeGenomics,
        FunctionalGenomics, MultipleSequenceAlignment
Imports: Biostrings, BiocGenerics, BiocParallel, GenomeInfoDb,
        GenomicRanges, IRanges, dplyr, data.table, parallel,
        doParallel, foreach, methods, S4Vectors, stats, numbers,
RoxygenNote: 7.2.1
Suggests: spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
Roxygen: list(markdown = TRUE)
Language: en-US
LazyData: false
Config/testthat/edition: 3
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/GenomAutomorphism
git_branch: RELEASE_3_16
git_last_commit: 9ee7737
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 21:37:35 UTC; biocbuild
Author: Robersy Sanchez [aut, cre] (<https://orcid.org/0000-0002-5246-1453>)
Maintainer: Robersy Sanchez <genomicmath@gmail.com>
Built: R 4.2.2; ; 2022-11-06 18:48:17 UTC; unix
