element;intro
#Welcome;Welcome to the interactive tour for <code>GeneTonic</code>!<br><br>Here you will get to know the functionality included in the <b>Overview/<b> panel.
#mymenu;Here is where you can move around the different tabs of <code>GeneTonic</code>.
#shiny-tab-tab_overview;This is the main content of the Overview tab. In this tab, some overview plots are provided on the <code>res_enrich</code> element you provided - these include a gene set volcano plot, and a plot where the contribution of each gene to the gene set is explicitly drawn as a single point, positioned according to their expression change.
#controlbar-toggle;You can control the number of gene sets you are inspecting (or labeling) by clicking on the controlbar toggle...
#n_genesets;... and changing there the number of genesets.
#controlbar-toggle;Close back the controlbar.
#shiny-tab-tab_overview;In order to render the elements in a smoother way, the content is organized in a <code>tabCard</code> UI element, and the plots are generated one by one.
#tabcard_deview;You can select the respective tab by clicking on their label.
#tabcard_deview-GenesetVolcano;In this case, you display a gene set volcano plot, and the first top categories are labeled with their description.
#tabcard_deview;Select the content of the next tab now...
#tabcard_deview-GenesetVolcanosimplified;... and see how the gene set volcano plot changes, by eliminating some of the redundant terms.
#gs_overlap;This widget controls how the redundant categories are simplified out of the original set. You can change the value here and see how this affects the main plot, re-rendered in the other UI element.
#tabcard_deview;Now select the content of the third tab...
#tabcard_deview-EnhancedTable;... which displays the output of <code>enhance_table</code>, in this case with a static plot.
#tabcard_deview;In the fourth tab...
#tabcard_deview-EnhancedTableinteractive;... the same content is displayed in an interactive way, where you can hover with the mouse on the single data points and read out their values.
#tabcard_deview;You can always change the content displayed by switching the tabs with a click on their label.
#shiny-tab-tab_overview;... and this will be displayed in the main panel.
#thanks;Thank you for taking the Overview panel tour of <code>GeneTonic</code>!
