Version 0.99.0

Pre-BioC submission

Version 0.99.1

Fixes for BioC submission
- notNMD is not required for vignettes
- whippet files are read in as a single object
- Fixed bug where leafcutter set creation snowballed

Version 0.99.2
- Fix for fread()'ing in gzip files on windows

Version 0.99.4
- Exon skipping and intron retention now works with manual coordinates again
- Documentation updates
