{% set version = "1.40.0" %}
{% set name = "GeneRegionScan" %}
{% set bioc = "3.9" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 68b83d6f500c10572e4d015ba84ccb66
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: BSgenome, affy, AnnotationDbi
requirements:
  host:
    - 'bioconductor-affxparser >=1.56.0,<1.57.0'
    - 'bioconductor-biobase >=2.44.0,<2.45.0'
    - 'bioconductor-biostrings >=2.52.0,<2.53.0'
    - 'bioconductor-s4vectors >=0.22.0,<0.23.0'
    - r-base
    - r-rcolorbrewer
  run:
    - 'bioconductor-affxparser >=1.56.0,<1.57.0'
    - 'bioconductor-biobase >=2.44.0,<2.45.0'
    - 'bioconductor-biostrings >=2.52.0,<2.53.0'
    - 'bioconductor-s4vectors >=0.22.0,<0.23.0'
    - r-base
    - r-rcolorbrewer
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>= 2)'
  summary: 'A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.'
extra:
  identifiers:
    - biotools:generegionscan
  parent_recipe:
    name: bioconductor-generegionscan
    path: recipes/bioconductor-generegionscan
    version: 1.36.0

