# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Mar 29 05:50:05 2021
# ------------------------------------------------

package:
  name: bioconductor-genefu
  version: 2.22.1
source:
  md5: 9872ab9e3aece8c66bb30fb9c5f5a08e
  url:
    - https://bioarchive.galaxyproject.org/genefu_2.22.1.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/genefu_2.22.1.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-genefu/bioconductor-genefu_2.22.1_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-aims 1.22.0 r40hdfd78af_1
    - bioconductor-annotationdbi 1.52.0 r40hdfd78af_1
    - bioconductor-biobase 2.50.0 r40hd029910_1
    - bioconductor-biocfilecache 1.14.0 r40hdfd78af_1
    - bioconductor-biocgenerics 0.36.0 r40hdfd78af_1
    - bioconductor-biomart 2.46.0 r40_0
    - bioconductor-impute 1.64.0 r40hacda110_1
    - bioconductor-iranges 2.24.1 r40hd029910_0
    - bioconductor-limma 3.46.0 r40hd029910_1
    - bioconductor-s4vectors 0.28.1 r40hd029910_0
    - bioconductor-survcomp 1.40.0 r40h399db7b_1
    - bwidget 1.9.14 ha770c72_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - cairo 1.16.0 h6cf1ce9_1008
    - curl 7.75.0 h979ede3_0
    - fontconfig 2.13.1 hba837de_1004
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_18
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_18
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.6 he838d99_2
    - gxx_impl_linux-64 9.3.0 hd87eabc_18
    - gxx_linux-64 9.3.0 h3fbe746_30
    - harfbuzz 2.8.0 h83ec7ef_1
    - icu 68.1 h58526e2_0
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - krb5 1.17.2 h926e7f8_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libblas 3.9.0 8_openblas
    - libcblas 3.9.0 8_openblas
    - libcurl 7.75.0 hc4aaa36_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_18
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgfortran-ng 9.3.0 hff62375_18
    - libgfortran5 9.3.0 hff62375_18
    - libglib 2.68.0 h3e27bee_2
    - libgomp 9.3.0 h2828fa1_18
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 8_openblas
    - libnghttp2 1.43.0 h812cca2_0
    - libopenblas 0.3.12 pthreads_h4812303_1
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - libtiff 4.2.0 hdc55705_0
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.0 h7f98852_2
    - libxcb 1.13 h7f98852_1003
    - libxml2 2.9.10 h72842e0_3
    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1k h7f98852_0
    - pango 1.48.4 hb8ff022_0
    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-amap 0.8_18 r40h228a9c8_2
    - r-askpass 1.1 r40hcdcec82_2
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40hcfec24a_0
    - r-base 4.0.3 h349a78a_8
    - r-bit 4.0.4 r40hcdcec82_0
    - r-bit64 4.0.5 r40hcdcec82_0
    - r-blob 1.2.1 r40h6115d3f_1
    - r-bootstrap 2019.6 r40h580db52_4
    - r-cachem 1.0.4 r40hcfec24a_0
    - r-class 7.3_18 r40hcfec24a_0
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-cluster 2.1.1 r40h859d828_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-curl 4.3 r40hcfec24a_1
    - r-dbi 1.1.1 r40hc72bb7e_0
    - r-dbplyr 2.1.0 r40hc72bb7e_0
    - r-digest 0.6.27 r40h1b71b39_0
    - r-dplyr 1.0.5 r40h03ef668_0
    - r-e1071 1.7_6 r40h03ef668_0
    - r-ellipsis 0.3.1 r40hcdcec82_0
    - r-fansi 0.4.2 r40hcfec24a_0
    - r-fastmap 1.1.0 r40h03ef668_0
    - r-generics 0.1.0 r40hc72bb7e_0
    - r-glue 1.4.2 r40hcfec24a_0
    - r-hms 1.0.0 r40hc72bb7e_0
    - r-httr 1.4.2 r40h6115d3f_0
    - r-ic10 1.5 r40h3121a25_3
    - r-ic10trainingdata 1.3.1 r40h6115d3f_1002
    - r-ipred 0.9_11 r40hcfec24a_0
    - r-jsonlite 1.7.2 r40hcfec24a_0
    - r-kernsmooth 2.23_18 r40h742201e_0
    - r-lattice 0.20_41 r40hcfec24a_3
    - r-lava 1.6.9 r40hc72bb7e_0
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40hcfec24a_1
    - r-mass 7.3_53.1 r40hcfec24a_0
    - r-matrix 1.3_2 r40he454529_0
    - r-mclust 5.4.7 r40h52d45c5_0
    - r-memoise 2.0.0 r40hc72bb7e_0
    - r-mime 0.10 r40hcfec24a_0
    - r-nnet 7.3_15 r40hcfec24a_0
    - r-numderiv 2016.8_1.1 r40h6115d3f_3
    - r-openssl 1.4.3 r40he5c4762_0
    - r-pamr 1.56.1 r40h580db52_4
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-plogr 0.2.0 r40h6115d3f_1003
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-prodlim 2019.11.13 r40h0357c0b_1
    - r-progress 1.2.2 r40h6115d3f_2
    - r-proxy 0.4_25 r40hcfec24a_0
    - r-purrr 0.3.4 r40hcdcec82_1
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rappdirs 0.3.3 r40hcfec24a_0
    - r-rcpp 1.0.6 r40h03ef668_0
    - r-rlang 0.4.10 r40hcfec24a_0
    - r-rmeta 3.0 r40h6115d3f_1003
    - r-rpart 4.1_15 r40hcfec24a_2
    - r-rsqlite 2.2.5 r40h03ef668_0
    - r-squarem 2021.1 r40hc72bb7e_0
    - r-stringi 1.5.3 r40hcabe038_1
    - r-stringr 1.4.0 r40h6115d3f_2
    - r-suppdists 1.1_9.5 r40h0357c0b_1
    - r-survival 3.2_10 r40hcfec24a_0
    - r-survivalroc 1.0.3 r40hcdcec82_1005
    - r-sys 3.4 r40hcdcec82_0
    - r-tibble 3.1.0 r40hcfec24a_1
    - r-tidyselect 1.1.0 r40h6115d3f_0
    - r-utf8 1.2.1 r40hcfec24a_0
    - r-vctrs 0.3.6 r40hcfec24a_0
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-xml 3.99_0.6 r40hcfec24a_0
    - r-xml2 1.3.2 r40h0357c0b_1
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - readline 8.0 he28a2e2_2
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.0 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.4.9 ha95c52a_0
  run:
    - bioconductor-aims >=1.22.0,<1.23.0
    - bioconductor-biomart >=2.46.0,<2.47.0
    - bioconductor-impute >=1.64.0,<1.65.0
    - bioconductor-limma >=3.46.0,<3.47.0
    - bioconductor-survcomp >=1.40.0,<1.41.0
    - r-amap
    - r-base >=4.0,<4.1.0a0
    - r-ic10
    - r-mclust
test:
  commands:
    - $R -e "library('genefu')"
about:
  description: 'Description: This package contains functions implementing various
    tasks usually required by gene expression analysis, especially in breast cancer
    studies: gene mapping between different microarray platforms, identification of
    molecular subtypes, implementation of published gene signatures, gene selection,
    and survival analysis.'
  home: https://bioconductor.org/packages/3.12/bioc/html/genefu.html
  license: Artistic-2.0
  summary: Computation of Gene Expression-Based Signatures in Breast Cancer
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:genefu
    - doi:10.1093/bioinformatics/btv693
