{% set version = "2.22.1" %}
{% set name = "genefu" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: 9872ab9e3aece8c66bb30fb9c5f5a08e
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival
requirements:
  host:
    - 'bioconductor-aims >=1.22.0,<1.23.0'
    - 'bioconductor-biomart >=2.46.0,<2.47.0'
    - 'bioconductor-impute >=1.64.0,<1.65.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - 'bioconductor-survcomp >=1.40.0,<1.41.0'
    - r-amap
    - r-base
    - r-ic10
    - r-mclust
  run:
    - 'bioconductor-aims >=1.22.0,<1.23.0'
    - 'bioconductor-biomart >=2.46.0,<2.47.0'
    - 'bioconductor-impute >=1.64.0,<1.65.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - 'bioconductor-survcomp >=1.40.0,<1.41.0'
    - r-amap
    - r-base
    - r-ic10
    - r-mclust
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'Computation of Gene Expression-Based Signatures in Breast Cancer'
  description: 'Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.'
extra:
  identifiers:
    - biotools:genefu
    - doi:10.1093/bioinformatics/btv693
  parent_recipe:
    name: bioconductor-genefu
    path: recipes/bioconductor-genefu
    version: 2.12.0

