CHANGES IN VERSION 1.2.0 (2024-04-27)
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USER VISIBLE CHANGES

    o Prompt an error when a 0-byte BAM file is passed as an argument.

    o Added a new filtering strategy based on stranded genomic windows that can be used when input RNA-seq data is stranded.

    o gDNAx objects store now also strandedness estimated values.

    o identifyStrandMode() has been deprecated in favor of strandedness().

    o gDNAdx() can now automatically guess library layout and protocol.

    o Added a new function gDNAtx() that performs filtering with the most common default strategy.

BUG FIXES

    o Bug fix in the show method for gDNAx objects.

    o Bug fix when the genome() getter on GAlignment* objects is not NA.

CHANGES IN VERSION 0.99.6 (2023-05-26)
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USER VISIBLE CHANGES

    o Submission of the first version to the Bioconductor project.
