# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Nov  4 07:38:42 2019
# ------------------------------------------------

package:
    name: bioconductor-gcapc
    version: 1.10.0
source:
    md5: 0db687d4176302902d1e0a63a77a8dab
    url:
        - https://bioarchive.galaxyproject.org/gcapc_1.10.0.tar.gz
        - https://bioconductor.org/packages/3.10/bioc/src/contrib/gcapc_1.10.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-gcapc/bioconductor-gcapc_1.10.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h7fc9f1b_2
        - binutils_linux-64 2.31.1 h6176602_12
        - bioconductor-biobase 2.46.0 r36h516909a_0
        - bioconductor-biocgenerics 0.32.0 r36_0
        - bioconductor-biocparallel 1.20.0 r36he1b5a44_0
        - bioconductor-biostrings 2.54.0 r36h516909a_0
        - bioconductor-bsgenome 1.54.0 r36_0
        - bioconductor-delayedarray 0.12.0 r36h516909a_0
        - bioconductor-genomeinfodb 1.22.0 r36_0
        - bioconductor-genomeinfodbdata 1.2.2 r36_0
        - bioconductor-genomicalignments 1.22.0 r36h516909a_0
        - bioconductor-genomicranges 1.38.0 r36h516909a_0
        - bioconductor-iranges 2.20.0 r36h516909a_0
        - bioconductor-rhtslib 1.18.0 r36h516909a_0
        - bioconductor-rsamtools 2.2.0 r36he1b5a44_0
        - bioconductor-rtracklayer 1.46.0 r36h516909a_0
        - bioconductor-s4vectors 0.24.0 r36h516909a_0
        - bioconductor-summarizedexperiment 1.16.0 r36_0
        - bioconductor-xvector 0.26.0 r36h516909a_0
        - bioconductor-zlibbioc 1.32.0 r36h516909a_0
        - bwidget 1.9.13 0
        - bzip2 1.0.8 h516909a_1
        - ca-certificates 2019.9.11 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_1
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_12
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_2
        - gfortran_linux-64 7.3.0 h553295d_12
        - glib 2.58.3 h6f030ca_1002
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_1
        - gxx_impl_linux-64 7.3.0 hdf63c60_2
        - gxx_linux-64 7.3.0 h553295d_12
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_2
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 14_openblas
        - libopenblas 0.3.7 h6e990d7_2
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 hfc65ed5_1004
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pango 1.42.4 ha030887_1
        - pcre 8.43 he1b5a44_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-base 3.6.1 hba50c9b_5
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-formatr 1.7 r36h6115d3f_1
        - r-futile.logger 1.4.3 r36h6115d3f_1002
        - r-futile.options 1.0.1 r36h6115d3f_1001
        - r-lambda.r 1.2.4 r36h6115d3f_0
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-matrixstats 0.55.0 r36hcdcec82_0
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-snow 0.4_3 r36h6115d3f_1001
        - r-xml 3.98_1.20 r36hcdcec82_1
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1003
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.3 h3b9ef0a_0
    run:
        - bioconductor-biocgenerics >=0.32.0,<0.33.0
        - bioconductor-biostrings >=2.54.0,<2.55.0
        - bioconductor-bsgenome >=1.54.0,<1.55.0
        - bioconductor-genomeinfodb >=1.22.0,<1.23.0
        - bioconductor-genomicalignments >=1.22.0,<1.23.0
        - bioconductor-genomicranges >=1.38.0,<1.39.0
        - bioconductor-iranges >=2.20.0,<2.21.0
        - bioconductor-rsamtools >=2.2.0,<2.3.0
        - bioconductor-s4vectors >=0.24.0,<0.25.0
        - r-base >=3.6,<3.7.0a0
        - r-mass
        - r-matrixstats
test:
    commands:
        - $R -e "library('gcapc')"
about:
    description: Peak calling for ChIP-seq data with consideration of potential GC
        bias in sequencing reads. GC bias is first estimated with generalized linear
        mixture models using effective GC strategy, then applied into peak significance
        estimation.
    home: https://bioconductor.org/packages/3.10/bioc/html/gcapc.html
    license: GPL-3
    license_file: /opt/conda/conda-bld/bioconductor-gcapc_1572857887459/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/R/share/licenses/GPL-3
    summary: GC Aware Peak Caller
extra:
    copy_test_source_files: true
    final: true
