# Generated by roxygen2: do not edit by hand

export(bindWidth)
export(gcEffects)
export(gcapcPeaks)
export(peaksCAT)
export(read5endCoverage)
export(refinePeaks)
export(refineSites)
import(Biostrings)
import(GenomeInfoDb)
import(GenomicRanges)
import(IRanges)
import(MASS)
import(S4Vectors)
importFrom(BSgenome,getBSgenome)
importFrom(BSgenome,getSeq)
importFrom(BiocGenerics,strand)
importFrom(GenomicAlignments,readGAlignments)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBamFlag)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(matrixStats,colMedians)
importFrom(methods,as)
importFrom(splines,ns)
importFrom(stats,density)
importFrom(stats,dnbinom)
importFrom(stats,dpois)
importFrom(stats,glm)
importFrom(stats,predict)
