BackGating              Sample backgating results
ITN                     Sample flow cytometry data
addName,curv1Filter,character-method
                        These methods are copied from flowViz to
                        eliminate its dependency on curv1Filter and
                        curv2Filter
autoGate                Automated gating of single populations in 2D
binByRef                Bin a test data set using bins previously
                        created by probability binning a control
                        dataset
calcPBChiSquare         Probability binning metirc for comparing the
                        probability binned datasets
calcPearsonChi          Pearsons chi-square statistic for comparing the
                        probability binned datasets
curv1Filter-class       Class "curv1Filter"
curv2Filter-class       Class "curv2Filter"
curvPeaks               Parse curv1Filter output
density1d               Find most likely separation between positive
                        and negative populations in 1D
fdPar                   The version of fdPar from fda 2.4.0 because the
                        new API changes the output. (specifically
                        res$fd$coefs) and thus breaks the landmarkreg
                        call.
flowStats-package       Statistical methods for flow cytometry data
                        analysis
gate_singlet            Creates a singlet polygon gate using the
                        prediction bands from a robust linear model
gaussNorm               Per-channel normalization based on landmark
                        registration
gpaSet                  Multi-dimensional normalization of flow
                        cytometry data
iProcrustes             Procrustes analysis. Using singular value
                        decomposition (SVD) to determine a linear
                        transformation to align the points in X to the
                        points in a reference matrix Y.
idFeaturesByBackgating
                        (Internal use only) Identify features of flow
                        cytometry data using backgating
landmarkMatrix          Compute and cluster high density regions in 1D
lymphFilter-class       Automated gating of elliptical cell populations
                        in 2D.
norm2Filter-class       Class "norm2Filter"
normQA                  Normalization quality assessment
normalize-methods       normalize a GatingSet imported with
                        flowWorkspace, using sequential normalization
                        on the manual gates in the GatingHierarchy.
overton_like            Overton-like subtraction of densities.
plotBins                Plots the probability bins overlaid with
                        flowFrame data
proBin                  Probability binning - a metric for evaluating
                        multivariate differences
quadrantGate            Automated quad gating
rangeGate               Find most likely separation between positive
                        and negative populations in 1D
spillover-flowSet       Compute a spillover matrix from a flowSet
spillover_match-flowSet
                        Construct a 'flowSet' for use with 'spillover'
                        by matching channel names to compensation
                        control filenames
spillover_ng-flowSet    Compute a spillover matrix from a 'flowSet',
                        simplified API
warpSet                 Normalization based on landmark registration
