Package: fishpond
Title: Fishpond: differential transcript and gene expression with
        inferential replicates
Version: 1.0.1
Author: Anqi Zhu, Avi Srivastava, Joseph Ibrahim, Rob Patro, Michael Love
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Fishpond contains methods for differential transcript
    and gene expression analysis of RNA-seq data using inferential
    replicates for uncertainty of abundance quantification,
    as generated by Gibbs sampling or bootstrap sampling.
Imports: graphics, stats, utils, methods, abind, gtools, qvalue,
        S4Vectors, SummarizedExperiment, matrixStats, svMisc
Suggests: testthat, knitr, rmarkdown, macrophage, tximeta,
        org.Hs.eg.db, samr, DESeq2, apeglm
License: GPL-2
Encoding: UTF-8
URL: https://github.com/mikelove/fishpond
biocViews: Sequencing, RNASeq, GeneExpression, Transcription,
        Normalization, Regression, MultipleComparison, BatchEffect,
        Visualization, DifferentialExpression, DifferentialSplicing,
        AlternativeSplicing, SingleCell
VignetteBuilder: knitr
LazyData: true
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/fishpond
git_branch: RELEASE_3_9
git_last_commit: f2e1fe2
git_last_commit_date: 2019-05-06
Date/Publication: 2019-05-06
NeedsCompilation: no
Packaged: 2019-05-07 03:09:30 UTC; biocbuild
Built: R 3.6.1; ; 2019-08-01 20:37:29 UTC; unix
