# find influential TF and Target based on multi-omics data

## Documentation for package ‘FindIT2’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

ATAC_normCount | ATAC normCount of E50h-72h in Chr5
calcRP_coverage | calcRP_coverage
calcRP_region | calcRP_region
calcRP_TFHit | calcRP_TFHit
enhancerPromoterCor | enhancerPromoterCor
findIT_enrichFisher | findI(nfluential)T(F)_enrichFisher
findIT_enrichWilcox | findIT_enrichWilcox
findIT_MARA | findIT_MARA
findIT_regionRP | findI(nfluential)T(F)_regionRP
findIT_TFHit | findI(nfluential)T(F)_TFHit
findIT_TTPair | findI(nfluential)T(F)_T(F)T(arget)Pair
getAssocPairNumber | getAssocPairNumber
integrate_ChIP_RNA | integrate_ChIP_RNA
integrate_replicates | integrate_replicates
jaccard_findIT_enrichFisher | jaccard_findIT_enrichFisher
jaccard_findIT_TTpair | jaccard_findIT_TTpair
loadPeakFile | loadPeakFile
mm_geneBound | mm_geneBound
mm_geneScan | mm_geneScan
mm_nearestGene | mm_nearestGene
peakGeneCor | peakGeneCor
plot_annoDistance | plot_annoDistance
plot_peakGeneAlias_summary | plot_peakGeneAlias_summary
plot_peakGeneCor | plot_peakGeneCor
RNADiff_LEC2_GR | RNA diff result from LEC2_GR VS LEC2_DMSO
RNA_normCount | RNA normCount of E50h-72h in Chr5
test_featureSet | test_featureSet
test_geneSet | test_geneSet
TF_target_database | TF-target database