call.npci	call.npci
call.npci,NPCI-method	call.npci-methods
call.npci-methods	call.npci-methods
compute	compute
compute,NPCI-method	compute-methods
compute-methods	compute-methods
deg.pairwise.fold.change	deg.pairwise.fold.change
deg.up.down.info	deg.up.down.info
deseq.median.ratio.normalization	deseq.median.ratio.normalization
divergence.multivariate.distributions	divergence.multivariate.distributions
fCI-class	fCI-class
fCI.call.by.index	fCI.call.by.index
fci.data	fci.data
figures	figures
figures,NPCI-method	figures-methods
figures-methods	figures-methods
find.fci.targets	find.fci.targets
find.fci.targets,NPCI-method	find.fci.targets-methods
find.fci.targets-methods	find.fci.targets-methods
find.mid.point	find.mid.point
get.fold.large.step	get.fold.large.step
get.npci.data	get.npci.data
get.npci.distance.matrix	get.npci.distance.matrix
get.outline.index	get.outline.index
get.protein.fold.step	get.protein.fold.step
get.rank.combinations	get.rank.combinations
get.rna.fold.step	get.rna.fold.step
initialize,NPCI-method	initialize-methods
initialize-methods	initialize-methods
intersect.of.lists	intersect.of.lists
is.installed	is.installed
multi.dimensional.fci.data	multi.dimensional.fci.data
normalization	normalization
normalization,NPCI-method	normalization-methods
normalization-methods	normalization-methods
NPCI-class	NPCI-class
npci.gene.by.pvalues	npci.gene.by.pvalues
npci.index.reconsidered	npci.index.reconsidered
npci.index.to.be.removed	npci.index.to.be.removed
npci.venn.diagram	npci.venn.diagram
pairwise.change.occupancy	pairwise.change.occupancy
populate	populate
populate,NPCI-method	populate-methods
populate-methods	populate-methods
report.target.summary	report.target.summary
setfCI	setfCI
setfCI,NPCI-method	setfCI-methods
setfCI-methods	setfCI-methods
show.targets	show.targets
show.targets,NPCI-method	show.targets-methods
show.targets-methods	show.targets-methods
summarize	summarize
summarize,NPCI-method	summarize-methods
summarize-methods	summarize-methods
total.library.size.normalization	total.library.size.normalization
trim.size.normalization	trim.size.normalization
two.sample.log.ratio	two.sample.log.ratio
two.sample.permutation.test	two.sample.permutation.test
venndiagram	venndiagram
venndiagram,NPCI-method	venndiagram-methods
venndiagram-methods	venndiagram-methods
