$	FAData
$,FAData-method	FAData
$,FAIncidenceRateResults-method	FAIncidenceRateResults
$,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
affectedIndividuals	FAData
affectedIndividuals,FAData-method	FAData
affectedKinshipGroups	FAKinGroupResults
affectedKinshipGroups,FAKinGroupResults-method	FAKinGroupResults
age	FAData
age,FAData-method	FAData
age<-	FAData
age<-,FAData-method	FAData
binomialTest	FAData-analysis
buildPed	FAData
buildPed,FAData-method	FAData
buildPed,FAKinGroupResults-method	FAKinGroupResults
buildPed,FAProbResults-method	FAProbResults
cliqueAndTrait	FAProbResults
cliqueAndTrait,FAProbResults-method	FAProbResults
cliques	FAProbResults
cliques,FAProbResults-method	FAProbResults
cliques,missing-method	Pedigree-utils
cliques<-	FAProbResults
cliques<-,FAProbResults-method	FAProbResults
connectedSubgraph	Pedigree-utils
countGenerations	Pedigree-utils
countGenerations,data.frame-method	Pedigree-utils
countGenerations,FAData-method	Pedigree-utils
countGenerations,pedigree-method	Pedigree-utils
countGenerations,pedigreeList-method	Pedigree-utils
doPlotPed	plotting-functions
estimateGenerations	Pedigree-utils
estimateGenerations,data.frame-method	Pedigree-utils
estimateGenerations,FAData-method	Pedigree-utils
estimateGenerations,pedigree-method	Pedigree-utils
estimateGenerations,pedigreeList-method	Pedigree-utils
estimateTimeAtRisk	FAData-analysis
export	FAData
export,FAData-method	FAData
FABinTestResults	FABinTestResults
FABinTestResults-class	FABinTestResults
factor2matrix	FAData-analysis
FAData	FAData
FAData-class	FAData
FAGenIndexResults	FAGenIndexResults
FAGenIndexResults-class	FAGenIndexResults
FAIncidenceRateResults	FAIncidenceRateResults
FAIncidenceRateResults-class	FAIncidenceRateResults
FAKinGroupResults	FAKinGroupResults
FAKinGroupResults-class	FAKinGroupResults
FAKinSumResults	FAKinSumResults
FAKinSumResults-class	FAKinSumResults
familialIncidenceRate	FAData-analysis
familialIncidenceRate,FAData-method	FAData-analysis
familialIncidenceRate,FAIncidenceRateResults-method	FAIncidenceRateResults
familialIncidenceRateTest	FAData-analysis
familialIncidenceRateTest,FAData-method	FAData-analysis
family	FAData
family,FAData-method	FAData
FAProbResults	FAProbResults
FAProbResults-class	FAProbResults
FAStdIncidenceRateResults	FAStdIncidenceRateResults
FAStdIncidenceRateResults-class	FAStdIncidenceRateResults
findFounders	Pedigree-utils
findFounders,data.frame-method	Pedigree-utils
findFounders,FAData-method	Pedigree-utils
findFounders,pedigree-method	Pedigree-utils
findFounders,pedigreeList-method	Pedigree-utils
fsir	FAData-analysis
fsir,FAData-method	FAData-analysis
fsir,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
fsirTest	FAData-analysis
fsirTest,FAData-method	FAData-analysis
genealogicalIndexTest	FAData-analysis
genealogicalIndexTest,FAData-method	FAData-analysis
generationsFrom	Pedigree-utils
generationsFrom,data.frame-method	Pedigree-utils
generationsFrom,FAData-method	Pedigree-utils
generationsFrom,pedigree-method	Pedigree-utils
generationsFrom,pedigreeList-method	Pedigree-utils
getAll	defineControls
getAll,data.frame-method	defineControls
getAll,FAData-method	defineControls
getAll,pedigree-method	defineControls
getAll,pedigreeList-method	defineControls
getAncestors	Pedigree-utils
getAncestors,data.frame-method	Pedigree-utils
getAncestors,FAData-method	Pedigree-utils
getAncestors,pedigree-method	Pedigree-utils
getAncestors,pedigreeList-method	Pedigree-utils
getChildren	Pedigree-utils
getChildren,data.frame-method	Pedigree-utils
getChildren,FAData-method	Pedigree-utils
getChildren,pedigree-method	Pedigree-utils
getChildren,pedigreeList-method	Pedigree-utils
getCommonAncestor	Pedigree-utils
getCommonAncestor,data.frame-method	Pedigree-utils
getCommonAncestor,FAData-method	Pedigree-utils
getCommonAncestor,pedigree-method	Pedigree-utils
getCommonAncestor,pedigreeList-method	Pedigree-utils
getExternalMatched	defineControls
getExternalMatched,data.frame-method	defineControls
getExternalMatched,FAData-method	defineControls
getExternalMatched,pedigree-method	defineControls
getExternalMatched,pedigreeList-method	defineControls
getFounders	Pedigree-utils
getFounders,data.frame-method	Pedigree-utils
getFounders,FAData-method	Pedigree-utils
getGenerationMatched	defineControls
getGenerationMatched,data.frame-method	defineControls
getGenerationMatched,FAData-method	defineControls
getGenerationMatched,pedigree-method	defineControls
getGenerationMatched,pedigreeList-method	defineControls
getGenerationSexMatched	defineControls
getGenerationSexMatched,data.frame-method	defineControls
getGenerationSexMatched,FAData-method	defineControls
getGenerationSexMatched,pedigree-method	defineControls
getGenerationSexMatched,pedigreeList-method	defineControls
getMissingMate	Pedigree-utils
getMissingMate,data.frame-method	Pedigree-utils
getMissingMate,FAData-method	Pedigree-utils
getMissingMate,pedigree-method	Pedigree-utils
getMissingMate,pedigreeList-method	Pedigree-utils
getSexMatched	defineControls
getSexMatched,data.frame-method	defineControls
getSexMatched,FAData-method	defineControls
getSexMatched,pedigree-method	defineControls
getSexMatched,pedigreeList-method	defineControls
getSiblings	Pedigree-utils
getSiblings,data.frame-method	Pedigree-utils
getSiblings,FAData-method	Pedigree-utils
getSiblings,pedigree-method	Pedigree-utils
getSiblings,pedigreeList-method	Pedigree-utils
getSingletons	Pedigree-utils
getSingletons,data.frame-method	Pedigree-utils
getSingletons,FAData-method	Pedigree-utils
kinship	FAData
kinship,FAData-method	FAData
kinshipGroupTest	FAData-analysis
kinshipGroupTest,FAData-method	FAData-analysis
kinshipSumTest	FAData-analysis
kinshipSumTest,FAData-method	FAData-analysis
lambda	FAStdIncidenceRateResults
lambda,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
ped2graph	Pedigree-utils
pedigree	FAData
pedigree,FAData-method	FAData
pedigree,missing-method	FAData
pedigree<-	FAData
pedigree<-,FAData-method	FAData
PedigreeAnalysis	FAData-analysis
pedigreeSize	FAData
pedigreeSize,FAData-method	FAData
PedigreeUtils	Pedigree-utils
phenotypedIndividuals	FAData
phenotypedIndividuals,FAData-method	FAData
plotPed	FAData
plotPed,FAData-method	FAData
plotPed,FAGenIndexResults-method	FAGenIndexResults
plotPed,FAIncidenceRateResults-method	FAIncidenceRateResults
plotPed,FAKinGroupResults-method	FAKinGroupResults
plotPed,FAKinSumResults-method	FAKinSumResults
plotPed,FAProbResults-method	FAProbResults
plotPed,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
plotRes	FAGenIndexResults
plotRes,FAGenIndexResults-method	FAGenIndexResults
plotRes,FAIncidenceRateResults-method	FAIncidenceRateResults
plotRes,FAKinGroupResults-method	FAKinGroupResults
plotRes,FAKinSumResults-method	FAKinSumResults
plotRes,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
probabilityTest	FAData-analysis
probabilityTest,FAData-method	FAData-analysis
removeSingletons	Pedigree-utils
removeSingletons,data.frame-method	Pedigree-utils
removeSingletons,FAData-method	Pedigree-utils
result	FAProbResults
result,FABinTestResults-method	FABinTestResults
result,FAGenIndexResults-method	FAGenIndexResults
result,FAIncidenceRateResults-method	FAIncidenceRateResults
result,FAKinGroupResults-method	FAKinGroupResults
result,FAKinSumResults-method	FAKinSumResults
result,FAProbResults-method	FAProbResults
result,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
resultForId	FAStdIncidenceRateResults
resultForId,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
runSimulation	FAProbResults
runSimulation,FAGenIndexResults-method	FAGenIndexResults
runSimulation,FAIncidenceRateResults-method	FAIncidenceRateResults
runSimulation,FAKinGroupResults-method	FAKinGroupResults
runSimulation,FAKinSumResults-method	FAKinSumResults
runSimulation,FAProbResults-method	FAProbResults
runSimulation,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
shareKinship	Pedigree-utils
shareKinship,FAData-method	Pedigree-utils
shareKinship,FAKinGroupResults-method	FAKinGroupResults
shareKinship,FAProbResults-method	FAProbResults
show	FAData
show,FAData-method	FAData
sliceAge	FAData-analysis
subPedigree	Pedigree-utils
switchPlotfun	plotting-functions
timeAtRisk	FAIncidenceRateResults
timeAtRisk,FAIncidenceRateResults-method	FAIncidenceRateResults
timeAtRisk<-	FAIncidenceRateResults
timeAtRisk<-,FAIncidenceRateResults-method	FAIncidenceRateResults
timeInStrata	FAStdIncidenceRateResults
timeInStrata,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
trait	FAData
trait,FAData-method	FAData
trait<-	FAData
trait<-,FABinTestResults-method	FABinTestResults
trait<-,FAData-method	FAData
trait<-,FAGenIndexResults-method	FAGenIndexResults
trait<-,FAIncidenceRateResults-method	FAIncidenceRateResults
trait<-,FAKinGroupResults-method	FAKinGroupResults
trait<-,FAKinSumResults-method	FAKinSumResults
trait<-,FAProbResults-method	FAProbResults
trait<-,FAStdIncidenceRateResults-method	FAStdIncidenceRateResults
traitByClique	FAProbResults
traitByClique,FAProbResults-method	FAProbResults
[,FABinTestResults,ANY,ANY,ANY-method	FABinTestResults
[,FABinTestResults,ANY-method	FABinTestResults
[,FAData,ANY,ANY,ANY-method	FAData
[,FAData,ANY-method	FAData
[,FAGenIndexResults,ANY,ANY,ANY-method	FAGenIndexResults
[,FAGenIndexResults,ANY-method	FAGenIndexResults
[,FAIncidenceRateResults,ANY,ANY,ANY-method	FAIncidenceRateResults
[,FAIncidenceRateResults,ANY-method	FAIncidenceRateResults
[,FAKinGroupResults,ANY,ANY,ANY-method	FAKinGroupResults
[,FAKinGroupResults,ANY-method	FAKinGroupResults
[,FAKinSumResults,ANY,ANY,ANY-method	FAKinSumResults
[,FAKinSumResults,ANY-method	FAKinSumResults
[,FAProbResults,ANY,ANY,ANY-method	FAProbResults
[,FAProbResults,ANY-method	FAProbResults
[,FAStdIncidenceRateResults,ANY,ANY,ANY-method	FAStdIncidenceRateResults
[,FAStdIncidenceRateResults,ANY-method	FAStdIncidenceRateResults
