# Evaluation of Bioinformatics Metrics

## Documentation for package ‘evaluomeR’ version 1.6.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bioMetrics | Dataset: Metrics for biological pathways
evaluomeRSupportedCBI | Get supported CBIs in evaluomeR.
getDataQualityRange | Dataframe getter for 'qualityRange' function.
getOptimalKValue | Calculating the optimal value of k. getOptimalKValue
globalMetric | Global metric score defined by a prediction.
metricsCorrelations | Calculation of Pearson correlation coefficient.
ontMetrics | Dataset: Structural ontology metrics
plotMetricsBoxplot | Metric values as a boxplot.
plotMetricsCluster | Metric values clustering.
plotMetricsClusterComparison | Comparison between two clusterings as plot. plotMetricsClusterComparison
plotMetricsMinMax | Minimum and maximum metric values plot.
plotMetricsViolin | Metric values as violin plot.
quality | Goodness of classifications.
qualityRange | Goodness of classifications for a range of k clusters.
qualitySet | Goodness of classifications for a set of k clusters.
rnaMetrics | Dataset: RNA quality metrics
stability | Stability index.
stabilityRange | Stability index for a range of k clusters.
stabilitySet | Stability index for a set of k clusters.