Package: escape
Title: Easy single cell analysis platform for enrichment
Version: 2.2.0
Date: 2024-10-23
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"),
    person(given = "Jared", family = "Andrews", role = c("aut"), email = "jared.andrews07@gmail.com"),
    person(given = "Alexei", family = "Martsinkovskiy", role = c("ctb"), email = "alexei.martsinkovskiy@gmail.com")
    )
Description: A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize ssGSEA, GSVA, AUCell, and UCell-based enrichment calculations across individual cells. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
biocViews: Software, SingleCell, Classification, Annotation,
        GeneSetEnrichment, Sequencing, GeneSignaling, Pathways
Depends: R (>= 4.1)
Imports: AUCell, BiocParallel, grDevices, dplyr, ggdist, ggplot2,
        ggpointdensity, GSEABase, GSVA, SingleCellExperiment, ggridges,
        msigdbr, stats, reshape2, patchwork, MatrixGenerics, utils,
        SummarizedExperiment, UCell, stringr, methods, SeuratObject,
        Matrix
Suggests: Seurat, hexbin, scran, knitr, rmarkdown, markdown, BiocStyle,
        RColorBrewer, rlang, spelling, testthat (>= 3.0.0), vdiffr
VignetteBuilder: knitr
Language: en-US
git_url: https://git.bioconductor.org/packages/escape
git_branch: RELEASE_3_20
git_last_commit: 8ab0853
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 00:38:23 UTC; biocbuild
Author: Nick Borcherding [aut, cre],
  Jared Andrews [aut],
  Alexei Martsinkovskiy [ctb]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.4.2; ; 2025-01-03 20:19:20 UTC; unix
