# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jul  7 20:33:14 2023
# ------------------------------------------------

package:
  name: bioconductor-ebseqhmm
  version: 1.34.0
source:
  md5: 3c727c482e89c11143c38785c3fa9570
  url:
    - https://bioarchive.galaxyproject.org/EBSeqHMM_1.34.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/EBSeqHMM/EBSeqHMM_1.34.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/EBSeqHMM_1.34.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-ebseqhmm/bioconductor-ebseqhmm_1.34.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-ebseq 1.40.0 r43hdfd78af_0
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.19.1 hd590300_0
    - ca-certificates 2023.5.7 hbcca054_0
    - cairo 1.16.0 hbbf8b49_1016
    - curl 8.1.2 h409715c_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.1.0 hc4be1a9_0
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.1.0 hd511a9b_0
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 13.1.0 hc4be1a9_0
    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 h81ceb04_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 17_linux64_openblas
    - libcblas 3.9.0 17_linux64_openblas
    - libcurl 8.1.2 h409715c_0
    - libdeflate 1.18 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.1.0 he3cc6c4_0
    - libgcc-ng 13.1.0 he5830b7_0
    - libgfortran-ng 13.1.0 h69a702a_0
    - libgfortran5 13.1.0 h15d22d2_0
    - libglib 2.76.4 hebfc3b9_0
    - libgomp 13.1.0 he5830b7_0
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 17_linux64_openblas
    - libnghttp2 1.52.0 h61bc06f_0
    - libopenblas 0.3.23 pthreads_h80387f5_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.1.0 hfd8a6a1_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.1.0 he3cc6c4_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - libtiff 4.5.1 h8b53f26_0
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.1 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libxml2 2.11.4 h0d562d8_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 hcb278e6_0
    - openssl 3.1.1 hd590300_1
    - pango 1.50.14 heaa33ce_1
    - pcre2 10.40 hc3806b6_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-base 4.3.0 hfabd6f2_1
    - r-bitops 1.0_7 r43h57805ef_2
    - r-blockmodeling 1.1.4 r43h61816a4_1
    - r-brio 1.1.3 r43h57805ef_2
    - r-callr 3.7.3 r43hc72bb7e_1
    - r-catools 1.18.2 r43ha503ecb_2
    - r-cli 3.6.1 r43ha503ecb_1
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-desc 1.4.2 r43hc72bb7e_2
    - r-diffobj 0.3.5 r43h57805ef_2
    - r-digest 0.6.33 r43ha503ecb_0
    - r-ellipsis 0.3.2 r43h57805ef_2
    - r-evaluate 0.21 r43hc72bb7e_1
    - r-fansi 1.0.4 r43h57805ef_1
    - r-fs 1.6.2 r43ha503ecb_1
    - r-glue 1.6.2 r43h57805ef_2
    - r-gplots 3.1.3 r43hc72bb7e_2
    - r-gtools 3.9.4 r43h57805ef_1
    - r-jsonlite 1.8.7 r43h57805ef_0
    - r-kernsmooth 2.23_21 r43h13b3f57_1
    - r-lattice 0.21_8 r43h57805ef_1
    - r-lifecycle 1.0.3 r43hc72bb7e_2
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-matrix 1.5_4.1 r43h316c678_1
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-pkgload 1.3.2 r43hc72bb7e_1
    - r-praise 1.0.0 r43hc72bb7e_1007
    - r-processx 3.8.2 r43h57805ef_0
    - r-ps 1.7.5 r43h57805ef_1
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rematch2 2.1.2 r43hc72bb7e_3
    - r-rlang 1.1.1 r43ha503ecb_1
    - r-rprojroot 2.0.3 r43hc72bb7e_0
    - r-testthat 3.1.10 r43ha503ecb_0
    - r-tibble 3.2.1 r43h57805ef_2
    - r-utf8 1.2.3 r43h57805ef_1
    - r-vctrs 0.6.3 r43ha503ecb_0
    - r-waldo 0.5.1 r43hc72bb7e_1
    - r-withr 2.5.0 r43hc72bb7e_2
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.6 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_0
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.2 hfc55251_7
  run:
    - bioconductor-ebseq >=1.40.0,<1.41.0
    - r-base >=4.3,<4.4.0a0
test:
  commands:
    - $R -e "library('EBSeqHMM')"
about:
  description: The EBSeqHMM package implements an auto-regressive hidden Markov model
    for statistical analysis in ordered RNA-seq experiments (e.g. time course or spatial
    course data). The EBSeqHMM package provides functions to identify genes and isoforms
    that have non-constant expression profile over the time points/positions, and
    cluster them into expression paths.
  home: https://bioconductor.org/packages/3.17/bioc/html/EBSeqHMM.html
  license: Artistic-2.0
  summary: Bayesian analysis for identifying gene or isoform expression changes in
    ordered RNA-seq experiments
extra:
  copy_test_source_files: true
  final: true
