Package: easyRNASeq
Version: 2.24.1
Date: 2020-04-24
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Maintainer: Nicolas Delhomme <nicolas.delhomme@umu.se>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.44.0), BiocFileCache (>= 1.7.10), BiocGenerics
        (>= 0.30.0), BiocParallel (>= 1.18.1), biomaRt (>= 2.40.5),
        Biostrings (>= 2.52.0), DESeq (>= 1.36.0), edgeR (>= 3.26.8),
        GenomeInfoDb (>= 1.20.0), genomeIntervals (>= 1.40.0),
        GenomicAlignments (>= 1.20.1), GenomicRanges (>= 1.36.1),
        SummarizedExperiment (>= 1.14.1), graphics, IRanges (>=
        2.18.3), LSD (>= 4.0), locfit, methods, parallel, rappdirs (>=
        0.3.1), Rsamtools (>= 2.0.3), S4Vectors (>= 0.22.1), ShortRead
        (>= 1.42.0), utils
Suggests: BiocStyle (>= 2.12.0), BSgenome (>= 1.52.0),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
        rmarkdown, RUnit (>= 0.4.32)
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing,
        ImmunoOncology
RoxygenNote: 7.1.0
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/easyRNASeq
git_branch: RELEASE_3_11
git_last_commit: df859ff
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-28
NeedsCompilation: no
Packaged: 2020-04-29 00:51:17 UTC; biocbuild
Built: R 4.0.0; ; 2020-05-12 05:52:03 UTC; unix
