# Annotate cell types for scRNA-seq data

## Documentation for package ‘EasyCellType’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cellmarker_tissue | Tissues in CellMarker database.
clustermole_tissue | Tissues in Clustermole database.
coremarkers | Title Summarize markers contirbuting to the cell type annotation
easyct | Annotate cell types for scRNA-seq data
gene_pbmc | Differential expressed marker genes in 9 clusters.
mapsymbol | Title Convert gene symbol to Entrez ID
panglao_tissue | Tissues in Panglao database.
pbmc_data | Peripheral Blood Mononuclear Cells (PBMC) data.
plot_bar | Create bar plots for each cluster
plot_dot | Create dot plot for annotation results
process_results | Title Annotate cell types for single cell RNA data
summarycelltype | Print test results
test_fisher | Fisher exact test used in function 'easyct'