{% set version = "1.54.0" %}
{% set name = "dyebias" %}
{% set bioc = "3.14" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: a01a2556c017eb40a9132e91be3277e7
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: limma, convert, GEOquery, dyebiasexamples, methods
requirements:
  host:
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-marray >=1.72.0,<1.73.0'
    - r-base
  run:
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-marray >=1.72.0,<1.73.0'
    - r-base
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'The GASSCO method for correcting for slide-dependent gene-specific dye bias'
  description: 'Many two-colour hybridizations suffer from a dye bias that is both gene-specific and slide-specific. The former depends on the content of the nucleotide used for labeling; the latter depends on the labeling percentage. The slide-dependency was hitherto not recognized, and made addressing the artefact impossible.  Given a reasonable number of dye-swapped pairs of hybridizations, or of same vs. same hybridizations, both the gene- and slide-biases can be estimated and corrected using the GASSCO method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009), doi:10.1038/msb.2009.21)'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
extra:
  identifiers:
    - biotools:dyebias
  parent_recipe:
    name: bioconductor-dyebias
    path: recipes/bioconductor-dyebias
    version: 1.40.0

