# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Nov  4 07:38:42 2019
# ------------------------------------------------

package:
    name: bioconductor-desubs
    version: 1.12.0
source:
    md5: 368277cf1986411d190a65cfc6658325
    url:
        - https://bioarchive.galaxyproject.org/DEsubs_1.12.0.tar.gz
        - https://bioconductor.org/packages/3.10/bioc/src/contrib/DEsubs_1.12.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-desubs/bioconductor-desubs_1.12.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h7fc9f1b_2
        - binutils_linux-64 2.31.1 h6176602_12
        - bioconductor-annotate 1.64.0 r36_0
        - bioconductor-annotationdbi 1.48.0 r36_0
        - bioconductor-biobase 2.46.0 r36h516909a_0
        - bioconductor-biocgenerics 0.32.0 r36_0
        - bioconductor-biocparallel 1.20.0 r36he1b5a44_0
        - bioconductor-delayedarray 0.12.0 r36h516909a_0
        - bioconductor-deseq 1.38.0 r36h516909a_0
        - bioconductor-deseq2 1.26.0 r36he1b5a44_0
        - bioconductor-ebseq 1.26.0 r36_0
        - bioconductor-edger 3.28.0 r36he1b5a44_0
        - bioconductor-genefilter 1.68.0 r36hc99cbb1_0
        - bioconductor-geneplotter 1.64.0 r36_0
        - bioconductor-genomeinfodb 1.22.0 r36_0
        - bioconductor-genomeinfodbdata 1.2.2 r36_0
        - bioconductor-genomicranges 1.38.0 r36h516909a_0
        - bioconductor-graph 1.64.0 r36h516909a_0
        - bioconductor-iranges 2.20.0 r36h516909a_0
        - bioconductor-limma 3.42.0 r36h516909a_0
        - bioconductor-qvalue 2.18.0 r36_0
        - bioconductor-rbgl 1.62.1 r36he1b5a44_0
        - bioconductor-s4vectors 0.24.0 r36h516909a_0
        - bioconductor-summarizedexperiment 1.16.0 r36_0
        - bioconductor-xvector 0.26.0 r36h516909a_0
        - bioconductor-zlibbioc 1.32.0 r36h516909a_0
        - bwidget 1.9.13 0
        - bzip2 1.0.8 h516909a_1
        - ca-certificates 2019.9.11 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_1
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_12
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_2
        - gfortran_linux-64 7.3.0 h553295d_12
        - glib 2.58.3 h6f030ca_1002
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_1
        - gxx_impl_linux-64 7.3.0 hdf63c60_2
        - gxx_linux-64 7.3.0 h553295d_12
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_2
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 14_openblas
        - libopenblas 0.3.7 h6e990d7_2
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 hfc65ed5_1004
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pango 1.42.4 ha030887_1
        - pcre 8.43 he1b5a44_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-acepack 1.4.1 r36h9bbef5b_1004
        - r-assertthat 0.2.1 r36h6115d3f_1
        - r-backports 1.1.5 r36hcdcec82_0
        - r-base 3.6.1 hba50c9b_5
        - r-base64enc 0.1_3 r36hcdcec82_1003
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-bibtex 0.4.2 r36hcdcec82_1003
        - r-bit 1.1_14 r36hcdcec82_1
        - r-bit64 0.9_7 r36hcdcec82_1001
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-blob 1.2.0 r36_1
        - r-blockmodeling 0.3.4 r36h9bbef5b_2
        - r-catools 1.17.1.2 r36h0357c0b_1
        - r-checkmate 1.9.4 r36hcdcec82_1
        - r-circlize 0.4.8 r36h6115d3f_0
        - r-cli 1.1.0 r36h6115d3f_2
        - r-cluster 2.1.0 r36h9bbef5b_2
        - r-codetools 0.2_16 r36h6115d3f_1001
        - r-colorspace 1.4_1 r36hcdcec82_1
        - r-crayon 1.3.4 r36h6115d3f_1002
        - r-data.table 1.12.6 r36hcdcec82_0
        - r-dbi 1.0.0 r36h6115d3f_1002
        - r-digest 0.6.22 r36h0357c0b_0
        - r-doparallel 1.0.15 r36h6115d3f_0
        - r-dorng 1.7.1 r36h6115d3f_1001
        - r-ellipsis 0.3.0 r36hcdcec82_0
        - r-evaluate 0.14 r36h6115d3f_1
        - r-fansi 0.4.0 r36hcdcec82_1001
        - r-foreach 1.4.7 r36h6115d3f_0
        - r-foreign 0.8_72 r36hcdcec82_0
        - r-formatr 1.7 r36h6115d3f_1
        - r-formula 1.2_3 r36h6115d3f_1002
        - r-futile.logger 1.4.3 r36h6115d3f_1002
        - r-futile.options 1.0.1 r36h6115d3f_1001
        - r-gdata 2.18.0 r36h6115d3f_1002
        - r-ggplot2 3.2.1 r36h6115d3f_0
        - r-globaloptions 0.1.1 r36_0
        - r-glue 1.3.1 r36hcdcec82_1
        - r-gplots 3.0.1.1 r36h6115d3f_1
        - r-gridextra 2.3 r36h6115d3f_1002
        - r-gtable 0.3.0 r36h6115d3f_2
        - r-gtools 3.8.1 r36hcdcec82_1003
        - r-highr 0.8 r36h6115d3f_1
        - r-hmisc 4.2_0 r36h9bbef5b_2
        - r-htmltable 1.13.2 r36h6115d3f_0
        - r-htmltools 0.4.0 r36h0357c0b_0
        - r-htmlwidgets 1.5.1 r36h6115d3f_0
        - r-igraph 1.2.4.1 r36h6786f55_2
        - r-iterators 1.0.12 r36h6115d3f_0
        - r-jsonlite 1.6 r36hcdcec82_1001
        - r-kernsmooth 2.23_15 r36h9bbef5b_1004
        - r-knitr 1.25 r36h6115d3f_0
        - r-labeling 0.3 r36h6115d3f_1002
        - r-lambda.r 1.2.4 r36h6115d3f_0
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-latticeextra 0.6_28 r36h6115d3f_1002
        - r-lazyeval 0.2.2 r36hcdcec82_1
        - r-locfit 1.5_9.1 r36h516909a_1004
        - r-magrittr 1.5 r36h6115d3f_1002
        - r-markdown 1.1 r36hcdcec82_0
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-matrixstats 0.55.0 r36hcdcec82_0
        - r-memoise 1.1.0 r36h6115d3f_1003
        - r-mgcv 1.8_29 r36hcdcec82_0
        - r-mime 0.7 r36hcdcec82_1
        - r-munsell 0.5.0 r36h6115d3f_1002
        - r-nbpseq 0.3.0 r36hcdcec82_1
        - r-nlme 3.1_141 r36h9bbef5b_1
        - r-nnet 7.3_12 r36hcdcec82_1003
        - r-pheatmap 1.0.12 r36h6115d3f_1
        - r-pillar 1.4.2 r36h6115d3f_2
        - r-pkgconfig 2.0.3 r36h6115d3f_0
        - r-pkgmaker 0.27 r36h6115d3f_1001
        - r-plogr 0.2.0 r36h6115d3f_1002
        - r-plyr 1.8.4 r36h0357c0b_1003
        - r-praise 1.0.0 r36h6115d3f_1003
        - r-prettyunits 1.0.2 r36h6115d3f_1002
        - r-r6 2.4.0 r36h6115d3f_2
        - r-rcolorbrewer 1.1_2 r36h6115d3f_1002
        - r-rcpp 1.0.2 r36h0357c0b_0
        - r-rcpparmadillo 0.9.800.1.0 r36h0357c0b_0
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-registry 0.5_1 r36h6115d3f_1
        - r-reshape2 1.4.3 r36h0357c0b_1004
        - r-rlang 0.4.1 r36hcdcec82_0
        - r-rngtools 1.4 r36h6115d3f_1
        - r-rpart 4.1_15 r36hcdcec82_1
        - r-rsqlite 2.1.2 r36h0357c0b_1
        - r-rstudioapi 0.10 r36h6115d3f_2
        - r-scales 1.0.0 r36h0357c0b_1002
        - r-shape 1.4.4 r36_1002
        - r-snow 0.4_3 r36h6115d3f_1001
        - r-stringi 1.4.3 r36h0e574ca_3
        - r-stringr 1.4.0 r36h6115d3f_1
        - r-survival 2.44_1.1 r36hcdcec82_1
        - r-testthat 2.2.1 r36h0357c0b_0
        - r-tibble 2.1.3 r36hcdcec82_1
        - r-utf8 1.1.4 r36hcdcec82_1001
        - r-vctrs 0.2.0 r36hcdcec82_1
        - r-viridis 0.5.1 r36h6115d3f_1003
        - r-viridislite 0.3.0 r36h6115d3f_1002
        - r-withr 2.1.2 r36h6115d3f_1001
        - r-xfun 0.10 r36h6115d3f_0
        - r-xml 3.98_1.20 r36hcdcec82_1
        - r-xtable 1.8_4 r36h6115d3f_2
        - r-yaml 2.2.0 r36hcdcec82_1002
        - r-zeallot 0.1.0 r36h6115d3f_1001
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1003
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.3 h3b9ef0a_0
    run:
        - bioconductor-deseq >=1.38.0,<1.39.0
        - bioconductor-deseq2 >=1.26.0,<1.27.0
        - bioconductor-ebseq >=1.26.0,<1.27.0
        - bioconductor-edger >=3.28.0,<3.29.0
        - bioconductor-graph >=1.64.0,<1.65.0
        - bioconductor-limma >=3.42.0,<3.43.0
        - bioconductor-rbgl >=1.62.0,<1.63.0
        - r-base >=3.6,<3.7.0a0
        - r-circlize
        - r-ggplot2
        - r-igraph
        - r-jsonlite
        - r-locfit
        - r-matrix
        - r-nbpseq
        - r-pheatmap
test:
    commands:
        - $R -e "library('DEsubs')"
about:
    description: DEsubs is a network-based systems biology package that extracts disease-perturbed
        subpathways within a pathway network as recorded by RNA-seq experiments. It
        contains an extensive and customizable framework covering a broad range of
        operation modes at all stages of the subpathway analysis, enabling a case-specific
        approach. The operation modes refer to the pathway network construction and
        processing, the subpathway extraction, visualization and enrichment analysis
        with regard to various biological and pharmacological features. Its capabilities
        render it a tool-guide for both the modeler and experimentalist for the identification
        of more robust systems-level biomarkers for complex diseases.
    home: https://bioconductor.org/packages/3.10/bioc/html/DEsubs.html
    license: GPL-3
    license_file: /opt/conda/conda-bld/bioconductor-desubs_1572864660075/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/share/licenses/GPL-3
    summary: 'DEsubs: an R package for flexible identification of differentially expressed
        subpathways using RNA-seq expression experiments'
extra:
    copy_test_source_files: true
    final: true
