# Generated by roxygen2: do not edit by hand

export(plotCluster)
export(plotOverview)
export(plotRegionCoverage)
export(vennRegions)
import(S4Vectors)
importFrom(GenomeInfoDb,'seqlengths<-')
importFrom(GenomeInfoDb,'seqlevels<-')
importFrom(GenomeInfoDb,renameSeqlevels)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsInUse)
importFrom(GenomicFeatures,exonsBy)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,seqinfo)
importFrom(GenomicRanges,seqnames)
importFrom(IRanges,resize)
importFrom(IRanges,width)
importFrom(RColorBrewer,brewer.pal)
importFrom(derfinder,extendedMapSeqlevels)
importFrom(ggbio,plotIdeogram)
importFrom(ggbio,theme_tracks_sunset)
importFrom(ggbio,tracks)
importFrom(ggplot2,aes)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,devAskNewPage)
importFrom(grDevices,palette)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,matplot)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,polygon)
importFrom(graphics,text)
importFrom(limma,vennCounts)
importFrom(limma,vennDiagram)
importFrom(methods,is)
importFrom(plyr,ddply)
importFrom(plyr,summarise)
importFrom(reshape2,melt)
importFrom(scales,log2_trans)
importFrom(scales,log_trans)
importFrom(utils,data)
importMethodsFrom(GenomicRanges,'$')
importMethodsFrom(GenomicRanges,as.data.frame)
importMethodsFrom(GenomicRanges,end)
importMethodsFrom(GenomicRanges,findOverlaps)
importMethodsFrom(GenomicRanges,gaps)
importMethodsFrom(GenomicRanges,names)
importMethodsFrom(GenomicRanges,range)
importMethodsFrom(GenomicRanges,start)
importMethodsFrom(IRanges,'[')
importMethodsFrom(IRanges,as.matrix)
importMethodsFrom(IRanges,findOverlaps)
importMethodsFrom(ggbio,autoplot)
importMethodsFrom(ggbio,layout_karyogram)
