Package: demuxmix
Title: Demultiplexing oligo-barcoded scRNA-seq data using regression
        mixture models
Version: 1.4.0
Date: 2023-08-14
Description: A package for demultiplexing single-cell sequencing experiments
    of pooled cells labeled with barcode oligonucleotides. The package
    implements methods to fit regression mixture models for a probabilistic
    classification of cells, including multiplet detection. Demultiplexing
    error rates can be estimated, and methods for quality control are provided.
Authors@R: person("Hans-Ulrich", "Klein",
    email = "hansulrich.klein@gmail.com",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-6382-9428"))
License: Artistic-2.0
Depends: R (>= 4.0.0)
Imports: stats, MASS, Matrix, ggplot2, gridExtra, methods
Suggests: BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown,
        testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: SingleCell, Sequencing, Preprocessing, Classification,
        Regression
BiocType: Software
URL: https://github.com/huklein/demuxmix
BugReports: https://github.com/huklein/demuxmix/issues
Encoding: UTF-8
RoxygenNote: 7.2.2
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/demuxmix
git_branch: RELEASE_3_18
git_last_commit: 4cd7194
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-24
NeedsCompilation: no
Packaged: 2023-10-24 20:56:58 UTC; biocbuild
Author: Hans-Ulrich Klein [aut, cre] (<https://orcid.org/0000-0002-6382-9428>)
Maintainer: Hans-Ulrich Klein <hansulrich.klein@gmail.com>
Built: R 4.3.2; ; 2023-12-04 02:07:40 UTC; unix
