# Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

## Documentation for package ‘demuxmix’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

csf | Hashtag oligonucleotide (HTO) counts from 2,590 droplets
Demuxmix | A class representing a set of mixture models fitted to HTO data
demuxmix | Demultiplexing using mixture models
Demuxmix-class | A class representing a set of mixture models fitted to HTO data
demuxmix-method | Demultiplexing using mixture models
dmmClassify | Return classification results from a Demuxmix object
dmmClassify-method | Return classification results from a Demuxmix object
dmmOverlap | Calculate the intersection of two components of a mixture model
dmmOverlap-method | Calculate the intersection of two components of a mixture model
dmmSimulateHto | Simulate HTO sequencing data
dmmSimulateHto-method | Simulate HTO sequencing data
pAcpt | A class representing a set of mixture models fitted to HTO data
pAcpt-method | A class representing a set of mixture models fitted to HTO data
pAcpt<- | A class representing a set of mixture models fitted to HTO data
pAcpt<--method | A class representing a set of mixture models fitted to HTO data
plotDmmHistogram | Plotting a histogram with mixture probability mass function
plotDmmHistogram-method | Plotting a histogram with mixture probability mass function
plotDmmPosteriorP | Plotting a histogram of posterior probabilities
plotDmmPosteriorP-method | Plotting a histogram of posterior probabilities
plotDmmScatter | Plotting RNA features versus HTO counts
plotDmmScatter-method | Plotting RNA features versus HTO counts
show-method | A class representing a set of mixture models fitted to HTO data
summary | Summarize classification results of a Demuxmix model
summary-method | A class representing a set of mixture models fitted to HTO data
summary-method | Summarize classification results of a Demuxmix model