DEGSet                  DEGSet
DEGreport-package       Deprecated functions in package DEGreport
createReport            Create report of RNAseq DEG anlaysis
deg                     Method to get all table stored for an specific
                        comparison
degCheckFactors         Distribution of gene ratios used to calculate
                        Size Factors.
degColors               Make nice colors for metadata
degComps                Automatize the use of 'results()' for multiple
                        comparisons
degCorCov               Calculate the correlation relationshipt among
                        all covariates in the metadata table
degCovariates           Find correlation between pcs and covariates
degDefault              Method to get the default table to use.
degFilter               Filter genes by group
degMA                   MA-plot from base means and log fold changes
degMB                   Distribution of expression of DE genes compared
                        to the background
degMDS                  Plot MDS from normalized count data
degMV                   Correlation of the standard desviation and the
                        mean of the abundance of a set of genes.
degMean                 Distribution of pvalues by expression range
degMerge                Integrate data comming from degPattern into one
                        data object
degObj                  Create a deg object that can be used to plot
                        expression values at shiny
                        server:runGist(9930881)
degPCA                  smart PCA from count matrix data
degPatterns             Make groups of genes using expression profile.
degPlot                 Plot top genes allowing more variables to color
                        and shape points
degPlotCluster          Plot clusters from degPattern function output
degPlotWide             Plot selected genes on a wide format
degQC                   Plot main figures showing p-values distribution
                        and mean-variance correlation
degResults              Complete report from DESeq2 analysis
degSignature            Plot gene signature for each group and
                        signature
degSummary              Print Summary Statistics of Alpha Level Cutoffs
degVB                   Distribution of the standard desviation of DE
                        genes compared to the background
degVar                  Distribution of pvalues by standard desviation
                        range
degVolcano              Create volcano plot from log2FC and adjusted
                        pvalues data frame
geneInfo                data.frame with chromose information for each
                        gene
geom_cor                Add correlation and p-value to a ggplot2 plot
humanGender             DGEList object for DE genes betwen Male and
                        Females
significants            Method to get the significant genes
