# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Jan 28 18:31:37 2019
# ------------------------------------------------

package:
    name: bioconductor-degreport
    version: 1.19.1
source:
    sha256: c30386fc78d062e49c22fa0845c93871affa9289281169c5e42a0f958c875de7
    url:
        - https://bioarchive.galaxyproject.org/DEGreport_1.19.1.tar.gz
        - https://bioconductor.org/packages/devel/bioc/src/contrib/DEGreport_1.19.1.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-degreport/bioconductor-degreport_1.19.1_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351_0
requirements:
    host:
        - _r-mutex 1.0.0 anacondar_1
        - bioconductor-all 1.22.0 r351_0
        - bioconductor-annotate 1.58.0 r351_0
        - bioconductor-annotationdbi 1.42.1 r351_0
        - bioconductor-biobase 2.40.0 r351ha44fe06_1
        - bioconductor-biocgenerics 0.26.0 r351_0
        - bioconductor-biocparallel 1.14.2 r351h26a2512_0
        - bioconductor-complexheatmap 1.18.1 r351_0
        - bioconductor-consensusclusterplus 1.44.0 r351_0
        - bioconductor-delayedarray 0.6.6 r351_0
        - bioconductor-deseq2 1.20.0 r351hfc679d8_0
        - bioconductor-edger 3.22.5 r351hfc679d8_0
        - bioconductor-genefilter 1.62.0 r351h26a2512_0
        - bioconductor-geneplotter 1.58.0 r351_0
        - bioconductor-genomeinfodb 1.16.0 r351_0
        - bioconductor-genomeinfodbdata 1.1.0 r351_0
        - bioconductor-genomicranges 1.32.7 r351h470a237_0
        - bioconductor-iranges 2.14.12 r351h470a237_0
        - bioconductor-limma 3.36.5 r351h470a237_0
        - bioconductor-s4vectors 0.18.3 r351h470a237_0
        - bioconductor-summarizedexperiment 1.10.1 r351_0
        - bioconductor-xvector 0.20.0 r351h470a237_0
        - bioconductor-zlibbioc 1.26.0 r351h470a237_0
        - bwidget 1.9.11 1
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.11.29 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.63.0 h74213dd_0
        - fontconfig 2.13.1 h65d0f4c_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h5e8e0c9_1
        - glib 2.56.2 h464dc38_1
        - graphite2 1.3.13 hfc679d8_0
        - gsl 2.2.1 h0c605f7_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.16.3 hbb41f41_0
        - libcurl 7.63.0 hbdb9355_0
        - libedit 3.1.20170329 haf1bffa_1
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_4
        - libpng 1.6.36 ha92aebf_0
        - libssh2 1.8.0 h5b517e9_3
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libtiff 4.0.10 he6b73bb_1
        - libuuid 2.32.1 h470a237_2
        - libxcb 1.13 h470a237_2
        - libxml2 2.9.8 h422b904_5
        - make 4.2.1 h470a237_1003
        - ncurses 6.1 hfc679d8_2
        - openssl 1.0.2p h470a237_2
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - pthread-stubs 0.4 h470a237_1
        - r-acepack 1.4.1 r351h364d78e_2
        - r-assertthat 0.2.0 r351h6115d3f_1001
        - r-backports 1.1.3 r351hc070d10_0
        - r-base 3.5.1 h391c2eb_5
        - r-base64enc 0.1_3 r351hc070d10_2
        - r-bh 1.66.0_1 r351_2001
        - r-bindr 0.1.1 r351h6115d3f_1001
        - r-bindrcpp 0.2.2 r351h9d2a408_1
        - r-bit 1.1_12 r351h470a237_2
        - r-bit64 0.9_7 r351hc070d10_0
        - r-bitops 1.0_6 r351hc070d10_2
        - r-blob 1.1.1 r351_1001
        - r-broom 0.5.1 r351h6115d3f_1000
        - r-checkmate 1.8.5 r351hc070d10_2
        - r-circlize 0.4.5 r351_1000
        - r-cli 1.0.1 r351h6115d3f_1000
        - r-cluster 2.0.7_1 r351h364d78e_0
        - r-colorspace 1.3_2 r351hc070d10_2
        - r-cowplot 0.9.3 r351h6115d3f_1001
        - r-crayon 1.3.4 r351h6115d3f_1001
        - r-data.table 1.11.8 r351hc070d10_0
        - r-dbi 1.0.0 r351h6115d3f_1001
        - r-digest 0.6.18 r351hc070d10_0
        - r-dplyr 0.7.8 r351h9d2a408_0
        - r-evaluate 0.12 r351h6115d3f_1000
        - r-fansi 0.4.0 r351hc070d10_0
        - r-foreign 0.8_71 r351hc070d10_2
        - r-formatr 1.5 r351h6115d3f_1001
        - r-formula 1.2_3 r351h6115d3f_1001
        - r-futile.logger 1.4.3 r351h6115d3f_1001
        - r-futile.options 1.0.1 r351h6115d3f_1000
        - r-generics 0.0.2 r351h6115d3f_1001
        - r-getoptlong 0.1.7 r351_1001
        - r-ggdendro 0.1_20 r351h6115d3f_1001
        - r-ggplot2 3.1.0 r351h6115d3f_1000
        - r-ggrepel 0.8.0 r351h9d2a408_2
        - r-globaloptions 0.1.0 r351_2001
        - r-glue 1.3.0 r351h470a237_2
        - r-gridextra 2.3 r351h6115d3f_1001
        - r-gtable 0.2.0 r351h6115d3f_1001
        - r-highr 0.7 r351h6115d3f_1001
        - r-hmisc 4.1_1 r351h364d78e_1
        - r-htmltable 1.13.1 r351h6115d3f_1000
        - r-htmltools 0.3.6 r351hfc679d8_2
        - r-htmlwidgets 1.3 r351h6115d3f_1000
        - r-jsonlite 1.6 r351hc070d10_0
        - r-knitr 1.21 r351h6115d3f_1000
        - r-labeling 0.3 r351h6115d3f_1001
        - r-lambda.r 1.2.3 r351h6115d3f_1000
        - r-lasso2 1.2_20 r351hc070d10_0
        - r-lattice 0.20_38 r351hc070d10_0
        - r-latticeextra 0.6_28 r351h6115d3f_1001
        - r-lazyeval 0.2.1 r351hc070d10_2
        - r-locfit 1.5_9.1 r351h470a237_2
        - r-logging 0.8_104 r351_1000
        - r-magrittr 1.5 r351h6115d3f_1001
        - r-markdown 0.9 r351hc070d10_0
        - r-mass 7.3_51.1 r351hc070d10_0
        - r-matrix 1.2_15 r351hc070d10_0
        - r-matrixstats 0.54.0 r351hc070d10_0
        - r-memoise 1.1.0 r351h6115d3f_1001
        - r-mgcv 1.8_26 r351hc070d10_0
        - r-mime 0.6 r351hc070d10_0
        - r-mnormt 1.5_5 r351h364d78e_1
        - r-munsell 0.5.0 r351h6115d3f_1001
        - r-nlme 3.1_137 r351h364d78e_0
        - r-nnet 7.3_12 r351hc070d10_2
        - r-nozzle.r1 1.1_1 r351_1001
        - r-pillar 1.3.1 r351h6115d3f_1000
        - r-pkgconfig 2.0.2 r351h6115d3f_1001
        - r-plogr 0.2.0 r351h6115d3f_1001
        - r-plyr 1.8.4 r351h9d2a408_2
        - r-prettyunits 1.0.2 r351h6115d3f_1001
        - r-psych 1.8.10 r351h6115d3f_1000
        - r-purrr 0.2.5 r351hc070d10_2
        - r-r6 2.3.0 r351h6115d3f_1000
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1001
        - r-rcpp 1.0.0 r351h9d2a408_0
        - r-rcpparmadillo 0.9.100.5.0 r351h9d2a408_0
        - r-rcurl 1.95_4.11 r351hc070d10_3
        - r-reshape 0.8.7 r351hc070d10_2
        - r-reshape2 1.4.3 r351h9d2a408_2
        - r-rjson 0.2.20 r351h9d2a408_0
        - r-rlang 0.3.0.1 r351h470a237_0
        - r-rpart 4.1_13 r351hc070d10_2
        - r-rsqlite 2.1.1 r351h9d2a408_0
        - r-rstudioapi 0.8 r351h6115d3f_1001
        - r-scales 1.0.0 r351h9d2a408_1
        - r-shape 1.4.4 r351_1001
        - r-snow 0.4_3 r351h6115d3f_1000
        - r-stringi 1.2.4 r351h9d2a408_1
        - r-stringr 1.3.1 r351h6115d3f_1001
        - r-survival 2.42_6 r351hc070d10_1
        - r-tibble 2.0.0 r351hc070d10_0
        - r-tidyr 0.8.2 r351h9d2a408_2
        - r-tidyselect 0.2.5 r351h9d2a408_0
        - r-utf8 1.1.4 r351hc070d10_0
        - r-viridis 0.5.1 r351h6115d3f_1001
        - r-viridislite 0.3.0 r351h6115d3f_1001
        - r-withr 2.1.2 r351h6115d3f_1000
        - r-xfun 0.4 r351h6115d3f_1000
        - r-xml 3.98_1.16 r351hc070d10_0
        - r-xtable 1.8_3 r351_2000
        - r-yaml 2.2.0 r351hc070d10_1
        - readline 7.0 haf1bffa_1
        - tk 8.6.9 ha92aebf_0
        - tktable 2.10 h14c3975_0
        - wget 1.19.5 h1ad7b7a_0
        - xorg-kbproto 1.0.7 h470a237_2
        - xorg-libice 1.0.9 h470a237_4
        - xorg-libsm 1.2.3 h8c8a85c_0
        - xorg-libx11 1.6.6 h470a237_0
        - xorg-libxau 1.0.8 h470a237_6
        - xorg-libxdmcp 1.1.2 h470a237_7
        - xorg-libxext 1.3.3 h470a237_4
        - xorg-libxrender 0.9.10 h470a237_2
        - xorg-renderproto 0.11.1 h470a237_2
        - xorg-xextproto 7.3.0 h470a237_2
        - xorg-xproto 7.0.31 h470a237_7
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_4
    run:
        - bioconductor-biobase
        - bioconductor-biocgenerics
        - bioconductor-complexheatmap
        - bioconductor-consensusclusterplus
        - bioconductor-deseq2
        - bioconductor-edger
        - bioconductor-s4vectors
        - bioconductor-summarizedexperiment
        - r-base >=3.5.1,<3.5.2.0a0
        - r-broom
        - r-circlize
        - r-cluster
        - r-cowplot
        - r-dplyr
        - r-ggdendro
        - r-ggplot2
        - r-ggrepel
        - r-knitr
        - r-lasso2
        - r-logging
        - r-magrittr
        - r-nozzle.r1
        - r-psych
        - r-rcolorbrewer
        - r-reshape
        - r-rlang
        - r-scales
        - r-stringr
        - r-tibble
        - r-tidyr
test:
    commands:
        - $R -e "library('DEGreport')"
about:
    home: https://bioconductor.org/packages/devel/bioc/html/DEGreport.html
    license: MIT + file LICENSE
    summary: Creation of a HTML report of differential expression analyses of count
        data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes,
        and report a ranked list of genes according to the fold changes mean and variability
        for each selected gene.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:degreport
        - doi:10.1038/nmeth.3252
