# Generated by roxygen2: do not edit by hand

S3method(as.data.frame,dce)
S3method(plot,dce)
export(as_adjmat)
export(create_random_DAG)
export(dce)
export(dce_nb)
export(estimate_latent_count)
export(g2dag)
export(get_pathway_info)
export(get_pathways)
export(get_prediction_counts)
export(graph2df)
export(graph_union)
export(pcor)
export(permutation_test)
export(plot_network)
export(propagate_gene_edges)
export(resample_edge_weights)
export(simulate_data)
export(topologically_ordering)
export(trueEffects)
import(CombinePValue)
import(assertthat)
import(ggraph)
import(glue)
import(graph)
import(graphite)
import(logger)
import(metap)
import(org.Hs.eg.db)
import(purrr)
import(stats)
import(tidyverse)
importFrom(MASS,ginv)
importFrom(MASS,rlm)
importFrom(MASS,rnegbin)
importFrom(Matrix,sparseMatrix)
importFrom(Rgraphviz,agopen)
importFrom(Rgraphviz,head)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,estimateDisp)
importFrom(expm,"%^%")
importFrom(ggplot2,aes)
importFrom(ggplot2,arrow)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,unit)
importFrom(ggplot2,waiver)
importFrom(glue,glue)
importFrom(graph,graphNEL)
importFrom(harmonicmeanp,p.hmp)
importFrom(igraph,V)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(methods,is)
importFrom(methods,new)
importFrom(mnem,transitive.closure)
importFrom(naturalsort,naturalorder)
importFrom(pcalg,causalEffect)
importFrom(pcalg,wgtMatrix)
importFrom(ppcor,pcor)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(stats,prcomp)
importFrom(tidygraph,.N)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,mutate)
