addOriginOfValue	addOriginOfValue
aggregateIter	aggregateIter
aggregateIterParallel	aggregateIterParallel
aggregateMean	aggregateMean
aggregateSum	aggregateSum
aggregateTopn	aggregateTopn
averageIntensities	averageIntensities
barplotEnrichGO_HC	barplotEnrichGO_HC
barplotGroupGO_HC	barplotGroupGO_HC
boxPlotD_HC	boxPlotD_HC
BuildAdjacencyMatrix	BuildAdjacencyMatrix
BuildColumnToProteinDataset	BuildColumnToProteinDataset
BuildColumnToProteinDataset_par	BuildColumnToProteinDataset_par
buildGraph	buildGraph
BuildPalette	BuildPalette
check.conditions	check.conditions
check.design	check.design
checkClusterability	checkClusterability
classic1wayAnova	classic1wayAnova
compareNormalizationD_HC	compareNormalizationD_HC
compute_t_tests	compute_t_tests
corrMatrixD_HC	corrMatrixD_HC
CountPep	CountPep
createMSnset	createMSnset
CVDistD	CVDistD
CVDistD_HC	CVDistD_HC
dapar_hc_chart	dapar_hc_chart
dapar_hc_ExportMenu	dapar_hc_ExportMenu
deleteLinesFromIndices	deleteLinesFromIndices
densityPlotD	densityPlotD
densityPlotD_HC	densityPlotD_HC
diffAnaComputeFDR	diffAnaComputeFDR
diffAnaGetSignificant	diffAnaGetSignificant
diffAnaSave	diffAnaSave
diffAnaVolcanoplot	diffAnaVolcanoplot
diffAnaVolcanoplot_rCharts	diffAnaVolcanoplot_rCharts
display.CC.visNet	display.CC.visNet
enrich_GO	enrich_GO
filterByProportion	filterByProportion
finalizeAggregation	finalizeAggregation
findMECBlock	findMECBlock
formatLimmaResult	formatLimmaResult
formatPHResults	formatPHResults
fudge2LRT	fudge2LRT
get.pep.prot.cc	get.pep.prot.cc
GetDetailedNbPeptides	GetDetailedNbPeptides
GetDetailedNbPeptidesUsed	GetDetailedNbPeptidesUsed
getIndicesConditions	getIndicesConditions
getIndicesOfLinesToRemove	getIndicesOfLinesToRemove
getListNbValuesInLines	getListNbValuesInLines
GetNbPeptidesUsed	GetNbPeptidesUsed
getNumberOf	getNumberOf
getNumberOfEmptyLines	getNumberOfEmptyLines
getPourcentageOfMV	getPourcentageOfMV
getProcessingInfo	getProcessingInfo
getProteinsStats	getProteinsStats
getQuantile4Imp	getQuantile4Imp
getTextForAggregation	getTextForAggregation
getTextForAnaDiff	getTextForAnaDiff
getTextForFiltering	getTextForFiltering
getTextForGOAnalysis	getTextForGOAnalysis
getTextForHypothesisTest	getTextForHypothesisTest
getTextForNewDataset	getTextForNewDataset
getTextForNormalization	getTextForNormalization
getTextForpeptideImputation	getTextForpeptideImputation
getTextForproteinImputation	getTextForproteinImputation
Get_AllComparisons	Get_AllComparisons
GlobalQuantileAlignment	GlobalQuantileAlignment
GOAnalysisSave	GOAnalysisSave
GraphPepProt	GraphPepProt
group_GO	group_GO
hc_logFC_DensityPlot	hc_logFC_DensityPlot
hc_mvTypePlot2	hc_mvTypePlot2
heatmap.DAPAR	heatmap.DAPAR
heatmapD	heatmapD
histPValue_HC	histPValue_HC
impute.detQuant	impute.detQuant
impute.pa2	impute.pa2
inner.aggregate.iter	inner.aggregate.iter
inner.aggregate.topn	inner.aggregate.topn
inner.mean	inner.mean
inner.sum	inner.sum
is.MV	is.MV
is.OfType	is.OfType
LH0	LH0
LH0.lm	LH0.lm
LH1	LH1
LH1.lm	LH1.lm
limmaCompleteTest	limmaCompleteTest
listSheets	listSheets
LOESS	LOESS
make.contrast	make.contrast
make.design	make.design
make.design.1	make.design.1
make.design.2	make.design.2
make.design.3	make.design.3
MeanCentering	MeanCentering
mvFilter	mvFilter
mvFilterFromIndices	mvFilterFromIndices
mvFilterGetIndices	mvFilterGetIndices
mvHisto_HC	mvHisto_HC
mvImage	mvImage
mvPerLinesHistoPerCondition_HC	mvPerLinesHistoPerCondition_HC
mvPerLinesHisto_HC	mvPerLinesHisto_HC
my_hc_chart	my_hc_chart
my_hc_ExportMenu	my_hc_ExportMenu
nonzero	nonzero
normalizeMethods.dapar	normalizeMethods.dapar
NumericalFiltering	NumericalFiltering
NumericalgetIndicesOfLinesToRemove	NumericalgetIndicesOfLinesToRemove
pepa.test	pepa.test
plotJitter	plotJitter
plotJitter_rCharts	plotJitter_rCharts
plotPCA_Eigen	plotPCA_Eigen
plotPCA_Eigen_hc	plotPCA_Eigen_hc
plotPCA_Ind	plotPCA_Ind
plotPCA_Var	plotPCA_Var
postHocTest	postHocTest
proportionConRev_HC	proportionConRev_HC
QuantileCentering	QuantileCentering
rbindMSnset	rbindMSnset
readExcel	readExcel
reIntroduceMEC	reIntroduceMEC
removeLines	removeLines
samLRT	samLRT
saveParameters	saveParameters
scatterplotEnrichGO_HC	scatterplotEnrichGO_HC
setMEC	setMEC
splitAdjacencyMat	splitAdjacencyMat
StringBasedFiltering	StringBasedFiltering
StringBasedFiltering2	StringBasedFiltering2
SumByColumns	SumByColumns
test.design	test.design
translatedRandomBeta	translatedRandomBeta
univ_AnnotDbPkg	univ_AnnotDbPkg
violinPlotD	violinPlotD
visualizeClusters	visualizeClusters
vsn	vsn
wrapper.compareNormalizationD_HC	wrapper.compareNormalizationD_HC
wrapper.corrMatrixD_HC	wrapper.corrMatrixD_HC
wrapper.CVDistD	wrapper.CVDistD
wrapper.CVDistD_HC	wrapper.CVDistD_HC
wrapper.dapar.impute.mi	wrapper.dapar.impute.mi
wrapper.hc_mvTypePlot2	wrapper.hc_mvTypePlot2
wrapper.heatmapD	wrapper.heatmapD
wrapper.impute.detQuant	wrapper.impute.detQuant
wrapper.impute.fixedValue	wrapper.impute.fixedValue
wrapper.impute.KNN	wrapper.impute.KNN
wrapper.impute.mle	wrapper.impute.mle
wrapper.impute.pa	wrapper.impute.pa
wrapper.impute.pa2	wrapper.impute.pa2
wrapper.impute.slsa	wrapper.impute.slsa
wrapper.mvHisto_HC	wrapper.mvHisto_HC
wrapper.mvImage	wrapper.mvImage
wrapper.mvPerLinesHistoPerCondition_HC	wrapper.mvPerLinesHistoPerCondition_HC
wrapper.mvPerLinesHisto_HC	wrapper.mvPerLinesHisto_HC
wrapper.normalizeD	wrapper.normalizeD
wrapper.pca	wrapper.pca
wrapperCalibrationPlot	wrapperCalibrationPlot
wrapperClassic1wayAnova	wrapperClassic1wayAnova
wrapperRunClustering	wrapperRunClustering
writeMSnsetToCSV	writeMSnsetToCSV
writeMSnsetToExcel	writeMSnsetToExcel
