# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jan  3 16:20:37 2025
# ------------------------------------------------

package:
  name: bioconductor-damsel
  version: 1.2.0
source:
  md5: 092df2b885b7fc10b382249f5a37c4bb
  url:
    - https://bioarchive.galaxyproject.org/Damsel_1.2.0.tar.gz
    - https://bioconductor.org/packages/3.20/bioc/src/contrib/Archive/Damsel/Damsel_1.2.0.tar.gz
    - https://bioconductor.org/packages/3.20/bioc/src/contrib/Damsel_1.2.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-damsel/bioconductor-damsel_1.2.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-damsel >=1.2.0,<1.3.0a0
  string: r44hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
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    - r-yaml 2.3.10 r44hdb488b9_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 75.6.0 pyhff2d567_1
    - sysroot_linux-64 2.17 h0157908_18
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h8bc8fbc_6
    - toml 0.10.2 pyhd8ed1ab_1
    - tomlkit 0.13.2 pyha770c72_1
    - tzdata 2024b hc8b5060_0
    - xmltodict 0.14.2 pyhd8ed1ab_1
    - xorg-libice 1.1.2 hb9d3cd8_0
    - xorg-libsm 1.2.5 he73a12e_0
    - xorg-libx11 1.8.10 h4f16b4b_1
    - xorg-libxau 1.0.12 hb9d3cd8_0
    - xorg-libxdmcp 1.1.5 hb9d3cd8_0
    - xorg-libxext 1.3.6 hb9d3cd8_0
    - xorg-libxrender 0.9.12 hb9d3cd8_0
    - xorg-libxt 1.3.1 hb9d3cd8_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.4.3 pyhd8ed1ab_1
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - bioconductor-annotationdbi >=1.68.0,<1.69.0
    - bioconductor-biostrings >=2.74.0,<2.75.0
    - bioconductor-complexheatmap >=2.22.0,<2.23.0
    - bioconductor-edger >=4.4.0,<4.5.0
    - bioconductor-genomeinfodb >=1.42.0,<1.43.0
    - bioconductor-genomicfeatures >=1.58.0,<1.59.0
    - bioconductor-genomicranges >=1.58.0,<1.59.0
    - bioconductor-ggbio >=1.54.0,<1.55.0
    - bioconductor-goseq >=1.58.0,<1.59.0
    - bioconductor-plyranges >=1.26.0,<1.27.0
    - bioconductor-rsamtools >=2.22.0,<2.23.0
    - bioconductor-rsubread >=2.20.0,<2.21.0
    - r-base >=4.4,<4.5.0a0
    - r-base >=4.4,<4.5.0a0
    - r-dplyr
    - r-ggplot2
    - r-magrittr
    - r-patchwork
    - r-reshape2
    - r-rlang
    - r-stringr
    - r-tidyr
test:
  commands:
    - $R -e "library('Damsel')"
about:
  description: Damsel provides an end to end analysis of DamID data. Damsel takes
    bam files from Dam-only control and fusion samples and counts the reads matching
    to each GATC region. edgeR is utilised to identify regions of enrichment in the
    fusion relative to the control. Enriched regions are combined into peaks, and
    are associated with nearby genes. Damsel allows for IGV style plots to be built
    as the results build, inspired by ggcoverage, and using the functionality and
    layering ability of ggplot2. Damsel also conducts gene ontology testing with bias
    correction through goseq, and future versions of Damsel will also incorporate
    motif enrichment analysis. Overall, Damsel is the first package allowing for an
    end to end analysis with visual capabilities. The goal of Damsel was to bring
    all the analysis into one place, and allow for exploratory analysis within R.
  home: https://bioconductor.org/packages/3.20/bioc/html/Damsel.html
  license: MIT + file LICENSE
  license_file: LICENSE
  summary: 'Damsel: an end to end analysis of DamID'
extra:
  copy_test_source_files: true
  final: true
