# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jul 19 08:27:21 2023
# ------------------------------------------------

package:
  name: bioconductor-damirseq
  version: 2.12.0
source:
  md5: 40d2de748f89528f9be59dff14696cdb
  url:
    - https://bioarchive.galaxyproject.org/DaMiRseq_2.12.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/DaMiRseq/DaMiRseq_2.12.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/DaMiRseq_2.12.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-damirseq/bioconductor-damirseq_2.12.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
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    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.6 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxfixes 5.0.3 h7f98852_1004
    - xorg-libxi 1.7.10 h7f98852_0
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_0
    - xorg-libxtst 1.2.3 h7f98852_1002
    - xorg-recordproto 1.14.2 h7f98852_1002
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.2 hfc55251_7
  run:
    - bioconductor-deseq2 >=1.40.0,<1.41.0
    - bioconductor-edaseq >=2.34.0,<2.35.0
    - bioconductor-edger >=3.42.0,<3.43.0
    - bioconductor-limma >=3.56.0,<3.57.0
    - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
    - bioconductor-sva >=3.48.0,<3.49.0
    - r-arm
    - r-base >=4.3,<4.4.0a0
    - r-caret
    - r-corrplot
    - r-e1071
    - r-factominer
    - r-fselector
    - r-ggplot2
    - r-hmisc
    - r-ineq
    - r-kknn
    - r-lubridate
    - r-mass
    - r-pheatmap
    - r-pls
    - r-plsvarsel
    - r-plyr
    - r-randomforest
    - r-rcolorbrewer
    - r-reshape2
    - r-rsnns
test:
  commands:
    - $R -e "library('DaMiRseq')"
about:
  description: The DaMiRseq package offers a tidy pipeline of data mining procedures
    to identify transcriptional biomarkers and exploit them for both binary and multi-class
    classification purposes. The package accepts any kind of data presented as a table
    of raw counts and allows including both continous and factorial variables that
    occur with the experimental setting. A series of functions enable the user to
    clean up the data by filtering genomic features and samples, to adjust data by
    identifying and removing the unwanted source of variation (i.e. batches and confounding
    factors) and to select the best predictors for modeling. Finally, a "stacking"
    ensemble learning technique is applied to build a robust classification model.
    Every step includes a checkpoint that the user may exploit to assess the effects
    of data management by looking at diagnostic plots, such as clustering and heatmaps,
    RLE boxplots, MDS or correlation plot.
  home: https://bioconductor.org/packages/3.17/bioc/html/DaMiRseq.html
  license: GPL (>= 2)
  license_file: /opt/conda/conda-bld/bioconductor-damirseq_1689756170095/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/share/licenses/GPL-3
  summary: 'Data Mining for RNA-seq data: normalization, feature selection and classification'
extra:
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
