\name{NEWS}
\title{News for Package 'DAMEfinder'}

\section{DAMEfinder VERSION 1.3.1}{
\itemize{
    \item change cmdscale.out for eigen.vectors in methyl_MDS_plot
}
}


\section{DAMEfinder VERSION 1.3.0}{
\itemize{
    \item update with new Bioc version
}
}


\section{DAMEfinder VERSION 1.1.4}{
\itemize{
    \item Add Z score as an alternative ASMsnp score
}
}

\section{DAMEfinder VERSION 1.1.3}{
\itemize{
    \item Add CITATION
    \item Remove "bad chromosome" filtering
    \item Argument `build` in extract_bams() removed
}
}

\section{DAMEfinder VERSION 1.1.2}{
\itemize{
    \item Remove vcfR dependency and add VariantAnnotation
}
}

\section{DAMEfinder VERSION 1.1.1}{
\itemize{
    \item Fix typo in split_bams that excluded some chromosomes
}
}

\section{DAMEfinder VERSION 0.99.3}{
\itemize{
    \item Change some files to other folders
}
}

\section{DAMEfinder VERSION 0.99.2}{
\itemize{
    \item Fix spacing (ggplot code looks funky now)
    \item Remove make_bigwigs func
    \item Fix examples for plotting functions
}
}

\section{DAMEfinder VERSION 0.99.1}{
\itemize{
    \item Fix description file
}
}

\section{DAMEfinder VERSION 0.99.0}{
\itemize{
    \item First version submitted to Bioconductor
}
}

\section{DAMEfinder VERSION 0.2.0}{
\itemize{
    \item New SNP-based ASM score. Includes VCF and BAM files as input.
    \item New p-value assignment methods.
    \item New plotting functions for MDS and Methyl-circle-plots.
}
}

\section{DAMEfinder VERSION 0.1.13}{
\itemize{
    \item Last version before S.Orjuela started working on it.
}
}
