DAMEfinder              DAMEfinder: Method to detect allele-specific
                        methylation (ASM), and differential ASM from
                        Bisulfite sequencing data in R.
calc_asm                Calculate ASM Score
calc_derivedasm         Calculate SNP-based ASM
calc_logodds            Calculate the log odds ratio
calc_score              Calculate score
calc_weight             Calculate Weight for ASM Score
dame_track              Plot score tracks
dame_track_mean         Plot means per group of score tracks.
extract_bams            Detect allele-specific methylation from a bam
                        file
extractbams_output      extract_bams() output.
find_dames              Find DAMEs
get_tstats              Get t-Statistics
methyl_MDS_plot         Multidimensional scaling plot of distances
                        between methylation proportions (beta values)
methyl_circle_plot      Draw methylation circle plot
methyl_circle_plotCpG   Draw methylation circle plot without SNP
modulus_sqrt            Get Modulus Square Root
read_tuples             Read in list of methtuple files
readtuples_output       read_tuples() output.
