# Generated by roxygen2: do not edit by hand

export(addScheme)
export(availableSchemes)
export(buildBackgroundModel)
export(cleanPeptides)
export(colorsets)
export(dagHeatmap)
export(dagLogo)
export(fetchSequence)
export(formatSequence)
export(getGroupingSymbol)
export(prepareProteome)
export(prepareProteomeByFTP)
export(prepareProteomeByUniProtWS)
export(testDAU)
exportClasses(Proteome)
exportClasses(dagBackground)
exportClasses(dagPeptides)
exportClasses(testDAUresults)
import(biomaRt)
import(grid)
import(methods)
import(pheatmap)
importClassesFrom(motifStack,marker)
importFrom(BiocGenerics,start)
importFrom(Biostrings,AAString)
importFrom(Biostrings,matchPattern)
importFrom(Biostrings,readAAStringSet)
importFrom(UniProt.ws,availableUniprotSpecies)
importFrom(UniProt.ws,lookupUniprotSpeciesFromTaxId)
importFrom(grDevices,dev.size)
importFrom(graphics,plot.new)
importFrom(grid,gList)
importFrom(grid,linesGrob)
importFrom(grid,rectGrob)
importFrom(grid,textGrob)
importFrom(httr,GET)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(motifStack,plotMotifLogoA)
importFrom(stats,fisher.test)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,pnorm)
importFrom(stats,rgamma)
importFrom(stats,sd)
importFrom(utils,adist)
importFrom(utils,download.file)
importFrom(utils,read.table)
