{% set version = "1.8.0" %}
{% set name = "cTRAP" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 0f43af697bc7e411e1976e9765f0af1d
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: testthat, knitr, covr, rmarkdown, spelling
requirements:
  host:
    - 'bioconductor-biomart >=2.46.0,<2.47.0'
    - 'bioconductor-fgsea >=1.16.0,<1.17.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - 'bioconductor-rhdf5 >=2.34.0,<2.35.0'
    - r-base
    - r-binr
    - r-cowplot
    - r-data.table
    - r-dplyr
    - r-dt
    - r-ggplot2
    - r-ggrepel
    - r-highcharter
    - r-httr
    - r-pbapply
    - r-r.utils
    - r-readxl
    - r-reshape2
    - r-scales
    - r-shiny
  run:
    - 'bioconductor-biomart >=2.46.0,<2.47.0'
    - 'bioconductor-fgsea >=1.16.0,<1.17.0'
    - 'bioconductor-limma >=3.46.0,<3.47.0'
    - 'bioconductor-rhdf5 >=2.34.0,<2.35.0'
    - r-base
    - r-binr
    - r-cowplot
    - r-data.table
    - r-dplyr
    - r-dt
    - r-ggplot2
    - r-ggrepel
    - r-highcharter
    - r-httr
    - r-pbapply
    - r-r.utils
    - r-readxl
    - r-reshape2
    - r-scales
    - r-shiny
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'MIT + file LICENSE'
  summary: 'Identification of candidate causal perturbations from differential gene expression data'
  description: 'Compare differential gene expression results with those from known cellular perturbations (such as gene knock-down, overexpression or small molecules) derived from the Connectivity Map. Such analyses allow not only to infer the molecular causes of the observed difference in gene expression but also to identify small molecules that could drive or revert specific transcriptomic alterations.'
  license_file: LICENSE

