# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Nov 10 10:11:20 2020
# ------------------------------------------------

package:
    name: bioconductor-ctrap
    version: 1.8.0
source:
    md5: 0f43af697bc7e411e1976e9765f0af1d
    url:
        - https://bioarchive.galaxyproject.org/cTRAP_1.8.0.tar.gz
        - https://bioconductor.org/packages/3.12/bioc/src/contrib/cTRAP_1.8.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-ctrap/bioconductor-ctrap_1.8.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40_0
requirements:
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_gnu
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.35 h18a2f87_9
        - binutils_linux-64 2.35 hc3fd857_29
        - bioconductor-annotationdbi 1.52.0 r40_0
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        - freetype 2.10.4 h7ca028e_0
        - fribidi 1.0.10 h36c2ea0_0
        - gcc_impl_linux-64 9.3.0 h28f5a38_17
        - gcc_linux-64 9.3.0 h7247604_29
        - gettext 0.19.8.1 hf34092f_1004
        - gfortran_impl_linux-64 9.3.0 h2bb4189_17
        - gfortran_linux-64 9.3.0 ha1c937c_29
        - gmp 6.2.0 h58526e2_4
        - graphite2 1.3.13 h58526e2_1001
        - gsl 2.6 hf94e986_0
        - gxx_impl_linux-64 9.3.0 h53cdd4c_17
        - gxx_linux-64 9.3.0 h0d07fa4_29
        - harfbuzz 2.7.2 hb1ce69c_1
        - icu 67.1 he1b5a44_0
        - jpeg 9d h36c2ea0_0
        - kernel-headers_linux-64 2.6.32 h77966d4_13
        - krb5 1.17.1 hfafb76e_3
        - ld_impl_linux-64 2.35 h769bd43_9
        - libblas 3.8.0 17_openblas
        - libcblas 3.8.0 17_openblas
        - libcurl 7.71.1 hcdd3856_8
        - libedit 3.1.20191231 he28a2e2_2
        - libev 4.33 h516909a_1
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        - libgcc-devel_linux-64 9.3.0 hfd08b2a_17
        - libgcc-ng 9.3.0 h5dbcf3e_17
        - libgfortran-ng 9.3.0 he4bcb1c_17
        - libgfortran5 9.3.0 he4bcb1c_17
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        - liblapack 3.8.0 17_openblas
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        - libpng 1.6.37 h21135ba_2
        - libssh2 1.9.0 hab1572f_5
        - libstdcxx-devel_linux-64 9.3.0 h4084dd6_17
        - libstdcxx-ng 9.3.0 h2ae2ef3_17
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        - lz4-c 1.9.2 he1b5a44_3
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        - pcre 8.44 he1b5a44_0
        - pcre2 10.35 h279444b_1
        - pixman 0.40.0 h36c2ea0_0
        - pthread-stubs 0.4 h14c3975_1001
        - r-askpass 1.1 r40hcdcec82_2
        - r-assertthat 0.2.1 r40h6115d3f_2
        - r-backports 1.2.0 r40h9e2df91_0
        - r-base 4.0.3 hc603457_2
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        - r-bh 1.72.0_3 r40h6115d3f_1
        - r-binr 1.1 r40hc72bb7e_0
        - r-bit 4.0.4 r40hcdcec82_0
        - r-bit64 4.0.5 r40hcdcec82_0
        - r-blob 1.2.1 r40h6115d3f_1
        - r-brio 1.1.0 r40h9e2df91_1
        - r-broom 0.7.2 r40h142f84f_0
        - r-callr 3.5.1 r40h142f84f_0
        - r-cellranger 1.1.0 r40h6115d3f_1003
        - r-cli 2.1.0 r40h142f84f_0
        - r-colorspace 1.4_1 r40hcdcec82_2
        - r-commonmark 1.7 r40hcdcec82_1002
        - r-cowplot 1.1.0 r40h6115d3f_0
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        - r-desc 1.2.0 r40h6115d3f_1003
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        - r-dt 0.16 r40h142f84f_0
        - r-ellipsis 0.3.1 r40hcdcec82_0
        - r-evaluate 0.14 r40h6115d3f_2
        - r-fansi 0.4.1 r40hcdcec82_1
        - r-farver 2.0.3 r40h0357c0b_1
        - r-fastmap 1.0.1 r40h0357c0b_1
        - r-fastmatch 1.1_0 r40hcdcec82_1005
        - r-formatr 1.7 r40h6115d3f_2
        - r-futile.logger 1.4.3 r40h6115d3f_1003
        - r-futile.options 1.0.1 r40h6115d3f_1002
        - r-generics 0.1.0 r40hc72bb7e_0
        - r-ggplot2 3.3.2 r40h6115d3f_0
        - r-ggrepel 0.8.2 r40h0357c0b_1
        - r-glue 1.4.2 r40hcdcec82_0
        - r-gridextra 2.3 r40h6115d3f_1003
        - r-gtable 0.3.0 r40h6115d3f_3
        - r-highcharter 0.8.2 r40h6115d3f_0
        - r-hms 0.5.3 r40h6115d3f_1
        - r-htmltools 0.5.0 r40h0357c0b_0
        - r-htmlwidgets 1.5.2 r40h142f84f_0
        - r-httpuv 1.5.4 r40h0357c0b_0
        - r-httr 1.4.2 r40h6115d3f_0
        - r-igraph 1.2.6 r40hfbf21e4_1
        - r-isoband 0.2.2 r40h0357c0b_0
        - r-jsonlite 1.7.1 r40hcdcec82_0
        - r-labeling 0.4.2 r40h142f84f_0
        - r-lambda.r 1.2.4 r40h6115d3f_1
        - r-later 1.1.0.1 r40h0357c0b_0
        - r-lattice 0.20_41 r40hcdcec82_2
        - r-lazyeval 0.2.2 r40hcdcec82_2
        - r-lifecycle 0.2.0 r40h6115d3f_1
        - r-lubridate 1.7.9 r40h0357c0b_0
        - r-magrittr 1.5 r40h6115d3f_1003
        - r-mass 7.3_53 r40hcdcec82_0
        - r-matrix 1.2_18 r40h7fa42b6_3
        - r-memoise 1.1.0 r40h6115d3f_1004
        - r-mgcv 1.8_33 r40h7fa42b6_0
        - r-mime 0.9 r40hcdcec82_1
        - r-munsell 0.5.0 r40h6115d3f_1003
        - r-nlme 3.1_150 r40h580db52_0
        - r-openssl 1.4.3 r40he5c4762_0
        - r-pbapply 1.4_3 r40h6115d3f_0
        - r-pillar 1.4.6 r40h6115d3f_0
        - r-pkgbuild 1.1.0 r40h6115d3f_0
        - r-pkgconfig 2.0.3 r40h6115d3f_1
        - r-pkgload 1.1.0 r40h0357c0b_0
        - r-plogr 0.2.0 r40h6115d3f_1003
        - r-plyr 1.8.6 r40h0357c0b_1
        - r-praise 1.0.0 r40h6115d3f_1004
        - r-prettyunits 1.1.1 r40h6115d3f_1
        - r-processx 3.4.4 r40hcdcec82_0
        - r-progress 1.2.2 r40h6115d3f_2
        - r-promises 1.1.1 r40h0357c0b_0
        - r-ps 1.4.0 r40h0eb13af_0
        - r-purrr 0.3.4 r40hcdcec82_1
        - r-quantmod 0.4.17 r40h6115d3f_1
        - r-r.methodss3 1.8.1 r40h6115d3f_0
        - r-r.oo 1.24.0 r40h6115d3f_0
        - r-r.utils 2.10.1 r40h6115d3f_0
        - r-r6 2.5.0 r40hc72bb7e_0
        - r-rappdirs 0.3.1 r40hcdcec82_1004
        - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
        - r-rcpp 1.0.4.6 r40h0357c0b_1
        - r-readxl 1.3.1 r40hde08347_4
        - r-rematch 1.0.1 r40h6115d3f_1003
        - r-rematch2 2.1.2 r40h6115d3f_1
        - r-reshape2 1.4.4 r40h0357c0b_1
        - r-rjson 0.2.20 r40h0357c0b_1002
        - r-rlang 0.4.8 r40h9e2df91_0
        - r-rlist 0.4.6.1 r40h6115d3f_1003
        - r-rprojroot 1.3_2 r40h6115d3f_1003
        - r-rsqlite 2.2.1 r40h1b71b39_0
        - r-rstudioapi 0.11 r40h6115d3f_1
        - r-scales 1.1.1 r40h6115d3f_0
        - r-shiny 1.5.0 r40h6115d3f_0
        - r-snow 0.4_3 r40h6115d3f_1002
        - r-sourcetools 0.1.7 r40he1b5a44_1002
        - r-stringi 1.5.3 r40h604b29c_0
        - r-stringr 1.4.0 r40h6115d3f_2
        - r-sys 3.4 r40hcdcec82_0
        - r-testthat 3.0.0 r40he524a50_0
        - r-tibble 3.0.4 r40h0eb13af_0
        - r-tidyr 1.1.2 r40h0357c0b_0
        - r-tidyselect 1.1.0 r40h6115d3f_0
        - r-ttr 0.24.2 r40hcdcec82_0
        - r-utf8 1.1.4 r40hcdcec82_1003
        - r-vctrs 0.3.4 r40hcdcec82_0
        - r-viridislite 0.3.0 r40h6115d3f_1003
        - r-waldo 0.2.2 r40hc72bb7e_0
        - r-withr 2.3.0 r40h6115d3f_0
        - r-xml 3.99_0.3 r40hcdcec82_1
        - r-xml2 1.3.2 r40h0357c0b_1
        - r-xtable 1.8_4 r40h6115d3f_3
        - r-xts 0.12.1 r40hcdcec82_0
        - r-yaml 2.2.1 r40hcdcec82_1
        - r-zeallot 0.1.0 r40h6115d3f_1002
        - r-zoo 1.8_8 r40hcdcec82_0
        - readline 8.0 he28a2e2_2
        - sed 4.8 hbfbb72e_0
        - sysroot_linux-64 2.12 h77966d4_13
        - tk 8.6.10 hed695b0_1
        - tktable 2.10 hb7b940f_3
        - xorg-kbproto 1.0.7 h14c3975_1002
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        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.12 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_1
        - zlib 1.2.11 h516909a_1010
        - zstd 1.4.5 h6597ccf_2
    run:
        - bioconductor-biomart >=2.46.0,<2.47.0
        - bioconductor-fgsea >=1.16.0,<1.17.0
        - bioconductor-limma >=3.46.0,<3.47.0
        - bioconductor-rhdf5 >=2.34.0,<2.35.0
        - r-base >=4.0,<4.1.0a0
        - r-binr
        - r-cowplot
        - r-data.table
        - r-dplyr
        - r-dt
        - r-ggplot2
        - r-ggrepel
        - r-highcharter
        - r-httr
        - r-pbapply
        - r-r.utils
        - r-readxl
        - r-reshape2
        - r-scales
        - r-shiny
test:
    commands:
        - $R -e "library('cTRAP')"
about:
    description: Compare differential gene expression results with those from known
        cellular perturbations (such as gene knock-down, overexpression or small molecules)
        derived from the Connectivity Map. Such analyses allow not only to infer the
        molecular causes of the observed difference in gene expression but also to
        identify small molecules that could drive or revert specific transcriptomic
        alterations.
    home: https://bioconductor.org/packages/3.12/bioc/html/cTRAP.html
    license: MIT + file LICENSE
    license_file: LICENSE
    summary: Identification of candidate causal perturbations from differential gene
        expression data
extra:
    copy_test_source_files: true
    final: true
